MmuINT0134161 @ mm9
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:34066839-34067386:+
Coord C1 exon
chr17:34066839-34066989
Coord A exon
chr17:34066990-34067189
Coord C2 exon
chr17:34067190-34067386
Length
200 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TCCCACCCGTCTCTCCCCAGGCG
3' ss Score
11.83
Exon sequences
Seq C1 exon
GGAAGCGGAAAGGGCGGGAGGGCCCGGGAGCCCGGCGGGGTGCAGGAGGGGGGCATCGCGGAAAAGCCGGGGAGGGGACTCGGTAGAGGGCCAGAGACCGACAAGAACAGAGGCCCGGGACCCGCGCGCAGCCCTCGCCCTTCCCGAGCAG
Seq A exon
GTCAGAGCCGGAGCACCGGGTGACCCTGCCCATTCCGCACTAGTTAGCCCCCAAGTCCCAAGCAAGCACCGAGGGCTTGGGTTTCCCCACTCCCGTATCTCCCTCCCCCAGCCTTCCTCAGGGACTCCCACCTAGGTCCCTTCTTGTCCGTCTCCCCCACGCCCGTCTGACTCCACCCAATCCCACCCGTCTCTCCCCAG
Seq C2 exon
GCGCCCCCATGGCCCGACCCCGCTGATTGCTTCTCTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGACCCCCCCCGGGGGAGTCGTGCTGAGCAGCTTCCGGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGATGAGGAAGAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-Rgl2:NM_009059:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.904
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCATCGCGGAAAAG
R:
TCTTCCTCATCCTCTTCCTCCTG
Band lengths:
293-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: