HsaINT1029206 @ hg38
Intron Retention
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33298455-33299324:-
Coord C1 exon
chr6:33298870-33299324
Coord A exon
chr6:33298652-33298869
Coord C2 exon
chr6:33298455-33298651
Length
218 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
CCCACCCCGTCTCTCCCCAGGCG
3' ss Score
11.89
Exon sequences
Seq C1 exon
CCGGCTCTCTCTCCGCCTGAAACGCTTCCCGCGGGAGTTTTAGCCGTGTTATTGTTGGGGAAGGGAATGTCAAATTCTGCTCCTGCCTTCCCCCAGGGGCTGGAGACTGGAATCTTTATTCCAGTTCATTGCGGGTCGACGTGGTCTCCAGAATCCCCGAGTGTAGAGGCGGAGGACAGTGGAGCTGGGGACTCGGGCGCCTGGGTCCTGGTCCCTGAGCGTCCAGCGCTCCCCTAGTCCGCGGCCCTGGCTCCTGTCCTCACTTCCTTCCCCTTTTGGCTCCTGCTCTCGGAGCGGGCGGACGCGGGGGGGAGCGGAAAGGGCGGGAGGGCCCAGGAGCCCGGCGGGGGGGTTCAAGGGGGTACGGAAAAGCCGGGGAGGGGACTCGGTCCGGGGCCGGAGACCGACGGCAACAGCGGCTCAGGACCCACGCTGCCCCCACCCCTCCCGAGCAG
Seq A exon
GTCAGAGCCTGAGCACCCTGCGCGTCCCCGTACTCGTGACCTCCTCCTTCCCCAACAGCACCAAGGGCCCCCCTATTCCACCCTTCTGTTGCCCCCTCCCCCAACCTTCCTGCAGAACTCCCTTCCGGTCTTCTTGACACCCACCCACGTCCCTTCCCTGCCCGGTTCCCCCGCGCCTGCCTGACTCTCCACCCCCACCCCACCCCGTCTCTCCCCAG
Seq C2 exon
GCGCCCCCATGGCCCGACCCCGCTGATTCCTTCACTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGAGCCCCCCCGGGGGAGTCGTACTGAGCAGCTTCCGAAGCCGGGACCCCGAAGAGGGTGGGGGCCCAGGTGGCCTGGTCGTGGGCGGGGGGCAGGAGGAAGAGGAGGAGGAAGAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441:ENST00000497454:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.887
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTTCCCCTTTTGGCTCC
R:
CTTCGGAAGCTGCTCAGTACG
Band lengths:
308-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains