BtaINT0124437 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7414482-7414957:-
Coord C1 exon
chr23:7414882-7414957
Coord A exon
chr23:7414682-7414881
Coord C2 exon
chr23:7414482-7414681
Length
200 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TCGCTCCTGTCTCTCCTCAGGCG
3' ss Score
11.48
Exon sequences
Seq C1 exon
GGGGACGTGATCCGGGGCCGGAGACCGACGGGAACGGCAACTCGGGAGCCGCGCTGCCCCCACCCGTCCTGAGCAG
Seq A exon
GTCAGAGCCGGAGCCCCCCGTAACCCCGCCCGAGCCCGTGCTCCTGACCCCCGGTCCACACAACGCCAGGCCCTGTGTGCCCCTGCAGCGTTGCCCCCCGCCCCACCTCCCCGCGGGGCTTCCCGGCGACTACCTGGAGCCCACCTTCTGGGGCCCTGCTCACCCCTGACCCCCGCCTCCTCGCTCCTGTCTCTCCTCAG
Seq C2 exon
GCGCCCCCATGGCCCGACCCCGCTGACTCCTTCAGCCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTGTGGGACACGAGCCCCCCTGGGGGAGTCGTGCTGAGCAGCTTCCGGAGTCGAGACCCCGAAGAGGGTGGGGGCCCCAGTGGCCGGGGCGGGGGCGGGGGGCAGGAGGAGGAAGACGACGACGACGACGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827:ENSBTAT00000022385:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.830
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACGGCAACTCGGGAG
R:
GTCGTCGTCGTCGTCGTCTT
Band lengths:
244-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]