RnoINT0126458 @ rn6
Intron Retention
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5465788-5466265:-
Coord C1 exon
chr20:5466189-5466265
Coord A exon
chr20:5465986-5466188
Coord C2 exon
chr20:5465788-5465985
Length
203 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TCCCACCCGTCTCTCCCCAGGCA
3' ss Score
11.65
Exon sequences
Seq C1 exon
GGACTCGGTAGAGGGCCAGAGACCGACAAGAACAGAGGCCCGGGACCCGCGCGCAGCCCCTCACCCTTCCCGAGCAG
Seq A exon
GTCAGAGCCGGAGCACCGGGTGACCCTGCCCATTCCGCAGTAGTTATGCCCCTAACCCCTAGCACGCCCCGAGGGCTCGGGTTTCCCTACTCCTGTATCTCCCCTCCCCCCCAGCCTTCCTGAGGGACTCCCACCCAGGTCCCTTCGTGCCCAAGTCCCCACGCCCGTCTGACTCCACCCCAATCCCACCCGTCTCTCCCCAG
Seq C2 exon
GCACCCCCAATGGCCCGACCCCGCTGATTCCTTCTCTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGAACCCCCCCGGGGGAGTCGTGTTGAGCAGCTTCCGGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGAGGAGGAAGAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474:ENSRNOT00000000554:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.942
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGTAGAGGGCCAGAGAC
R:
TCTTCTTCCTCCTCCTCTTCCT
Band lengths:
268-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]