MmuINT0134170 @ mm9
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:34067190-34068754:+
Coord C1 exon
chr17:34067190-34067386
Coord A exon
chr17:34067387-34068670
Coord C2 exon
chr17:34068671-34068754
Length
1284 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCCTCTTCTTGCTCCTCCAGGCT
3' ss Score
10.94
Exon sequences
Seq C1 exon
GCGCCCCCATGGCCCGACCCCGCTGATTGCTTCTCTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGACCCCCCCCGGGGGAGTCGTGCTGAGCAGCTTCCGGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGATGAGGAAGAAGAAGAG
Seq A exon
GTGAGACGCGGGTGGCGGGAGGCAGGGCATTAAATATTTCTGAGACTCTCCTCCTTTCGGTGTCTCTGGGTCCCTCGGTCTCTTCCTCCCCGCCTCACTCGCATCCCGCCCGCCACACTCTCTCTGGATATCTGTCCCCTGGCTGCGGGTCCTGGTGTCTATGAAGTTCGCCCTGTCTGTCTGCTCGGAACCTGCCCGTAGGAACCTGCCGGAACCAGAATGGCTGGCTGGCAGACGGGCTGACTGTGCCTGCGGGGCTCAGGCCCTCTTTGCCCATACCTGCTTAGACGGGTGCCACTGGGCAGTTGTATCTTGGTCCCTGTCTCCCTCCTCGTTTTTTGTTTGGCTGGGAGGGGTTTGTTTCCACAGTAACCAGCTCCTCAGACTCTAGGATTGGGGAGGGAACCCTCAGATTTCGCCGCCTCTTCCCCCACCCCCTGGTGCTCAATAGAGGGCAGCAAGCCAAGAGGTTCCGGCACCTGGAGAGATGATCCCGGGATAGGTAGAGCGTGGTCATCTTCGTCCAAAGAGACTGATAGGATGTAGTCCGCAGCAAGATTTAGGGATTCAGGAGGGTCCAGAAGTTAGATTCGGAGCCCGAGGATCCAGACTCCTGGGCCCCGACATTGGTAAAGTTAGGGTGACTAGCAAGGCTGGTTTTTCGGGATCGGTCGGGGGAGGGGCTAGGGCCACATGACTCTGAGTCTACCGCCCCCCCCCCCCATCATCCTTACTTCCCCTTCTTGTAACTGGGATTGGAGCCGCCACCTTCAGGGGGTCCCCAGTGCTGAGATTAAGTGGAAGCTGTATTGGGGACCTGGGGAAAAGGAGTCTCTGCGGAAGGACTAAATTTGGGCTCCTCTGGTTCTGTCAGGGAGGGCGGGCCTTGTGAAGTTTCAGCTTCTCTCTGCTTCAGGTCTCTCTTCCTTTGGCTTTGTGCCTCTTCGGGCGCGCTCTGCTCCTGACTTTGCGCCCTGCTTTTCTGCGTTGGGCTCAGCTGTGGGACAAGGGGGGTTGGAGGTGGCCAGAAGAGGGGTTCCTGCATTCAGTTGAAACCCTCACTGCAACCTCTTCCATCCCACCGAGCTCTGAGGTGGCCGGGGGGGCTGTCTGAGCCCCAGGGTGGGGTAGACCTGGGGTCACCAGTACCCTCTACCCCTCGCACTCGCTGGTATTGTCCCCCGCCATCACAGGTGAGGGGTGCAGAGGGAGGAACAGGGCCTGGGGACAATGGCTGGGGACTGGAGGTGCTGTGGAACTCACTTCCTCTTCTTGCTCCTCCAG
Seq C2 exon
GCTTCTGTGTCAGTCTGGGACGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTACAGGCCTCTTGACCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-Rgl2:NM_009059:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.904 A=NA C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCGCTGATTGCTTCTC
R:
CAAGGGGTCAAGAGGCCTGTA
Band lengths:
266-1550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: