BtaINT0124446 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7413192-7414681:-
Coord C1 exon
chr23:7414482-7414681
Coord A exon
chr23:7413276-7414481
Coord C2 exon
chr23:7413192-7413275
Length
1206 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCCCTTCTTGCTCCTCCAGGCC
3' ss Score
12.08
Exon sequences
Seq C1 exon
GCGCCCCCATGGCCCGACCCCGCTGACTCCTTCAGCCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTGTGGGACACGAGCCCCCCTGGGGGAGTCGTGCTGAGCAGCTTCCGGAGTCGAGACCCCGAAGAGGGTGGGGGCCCCAGTGGCCGGGGCGGGGGCGGGGGGCAGGAGGAGGAAGACGACGACGACGACGACGAG
Seq A exon
GTGAGGCGCGGGCGGCATGTGTCCCGGAGACTCTCCCCGCTGCGAGTCTGTGTCCCTGCGTCTCTTCCTGCCTCAGCCCTTGCTGCGCCTCTCGCCGGAGTCGGCCCGTGTCCCCCAGCGGGGAGCCCCGAGGTTCTGTGCGGCACAGACACTCAGGAGCCTGCCCCGTTCGCGCACGGCGCGTGTGGCTGGCTGGCCTGCGGGTCCCTAGCCCTCTCCGCCCTTGCCCGAGTGGCCCGTCCCTCCGGGCGTGGAGTCTAGGTCCCTGTCTCCCTCCGGGTGTCTGTTTGGCGGGGAGGGGTTTGTTTCCACAGTAACCCGCTCCTCCGACTTCGGGATTGGGGAGGGAACCCTTCTATTTCGTGACCCCTCCCCGCTCCGCTCCGCCGCCTGGGGCTGGGCGGAGGTGGGGAGCCGAGGCTCTCGGACCGTTGAGGGCGGTCCCGGGCCGAGTGGCTGGTGGTCACCTGCTTCTCTCCGGGGCTAGTGGCAGGAGTAGGATTCGGGCCTTAAGAAGGGCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACACACACACACACACACCATCCCCACTTCCCCTTCTCCTTCCTGTATTGGGATCGGCGCCGCAGCCCTGAGGGGGGTCTCCAGAGCTGAGGAGGGACCCGGAGAAAGGGGGCTAAGGGGACTTACTCTTTGGGCTTGGCTAGTTCCTGCGGGGGAGGGCGGAGCATGCGGTTGTGCCTGTGACTGAGGTTTCAGCTTCTCTAGATCGCTGCCTCAGGCTTTCTGCCTCTCTTGCTTCCCCCTCCTCCTACCTTTGCACCTGGATTCTTGGCTGTTCAAGGGTTCAGCTCTGGGGGGAAGGGGCTGCAGCGGTCACCAGGCTCAGGGTTCCTGCATTCCATCCAACTCCCCACTGCAACCCCTTAGACTCCACCGGGCCCTGAGGCGGCTTGGGGGGGGCTGTCTGGGCCCCAGTGGGGAAGACCTGGGGTCACCATTCCCCCCAACCCCTCGTACTCGCTGGTACTGTCCCCCTCCGCAACAGGTGAGGGGCACAGAGGGAGGAGCAGGGCTTGGGGGTGAGGCTTGGGCAGTGGGGTGGGGTGTGGAACCATCTGACCTCCCCTTCTTGCTCCTCCAG
Seq C2 exon
GCCCCTGTGTCTGTCTGGGAGGAGGAGGAGGATGGTGCTACCTTTACAGTCACAAGTCGCCAGTATCAGCCTCTTGATTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827:ENSBTAT00000022385:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=NA C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCCCGCTGACTCCTTC
R:
CAAGGAATCAAGAGGCTGATACTGG
Band lengths:
270-1476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]