RnoINT0126467 @ rn6
Intron Retention
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5464436-5465985:-
Coord C1 exon
chr20:5465788-5465985
Coord A exon
chr20:5464520-5465787
Coord C2 exon
chr20:5464436-5464519
Length
1268 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCCTCTTCTTGCTCCTCCAGGCT
3' ss Score
10.94
Exon sequences
Seq C1 exon
GCACCCCCAATGGCCCGACCCCGCTGATTCCTTCTCTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGAACCCCCCCGGGGGAGTCGTGTTGAGCAGCTTCCGGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGAGGAGGAAGAAGAAGAG
Seq A exon
GTGAGACGCGGGTGGCGGGAGGAAAGGCATTAAGTATTTCTGAGACTCTTCTCTTGGTGTTTCTGGGTCCCTCGGTCTCTTCCTCCCTGCCTCCCTTTCACCCCGCCACGCTCTTTCTCTGGATATCTGTCCCCTGGCTGCGGGTCCTGGTGTCTCTGAAGTTCGCCCTGTCCGTCTGACTCGGAACCCGCCCGCAGGAACCTGCCGAGTTCCTGCCTGGAATGTCTGGCTGGCAGGCAGGATGGCTGTGCCTGCGGGGCTCAGGCCCCCTCTGCCCACACCTGCCTCTGACGGCTGCCACTGGGCAGTTAGTTGTGTCTTGGTCCCTGTCTCCCTCCTCGTTTTTGTTTGGCTGGGAGGGGTTTGTTTCCACAGTAACCGGCTCCTCAGACTCTAGGATTGGGGAGGGAAGCCTCTGGCTTCACCGCCTCTTCCCCCACCCCCTGGTGCTCAATAAAGGGCAGCGAGCCAAGAGGTTCTGGCACCTGGAGAGATGATCCCAGGATAGGTAGAGCGTGGTCATCTTCGTCCTTAGGGATTAGTAGTTGTGACTGTAGCTGCAGGATTTAGGGTTTCAGGAGGGTTCAGAAGTTAGAATCGGAGCCTGAGGACTCAGACTTCTGGGCCCCGACATTGGTAAAGTTAGGGTGACTGGCAAGGCTGGTTTTTCGGGATCGGTCGGGGGAGGGGCTAGGGCCACATGACTCTTAGTCTACCGCCCCCACCCCCCCATCATCCCTACTTCCCCTTCTTGTAACTGGGATTGGAGCCGCCACCTTCAGGGGGTCCCCAGTGCTGAGATTGAGTGGAAGCTGTATTGGGGATCCGGGGAAGGGAGTCTGCGGAATTTGGGCTCCTCTGGTTCAGTCAGGGAGGGCGGGTCTTGTGAAGTTTCAGCTTCAGGTCTCTCCGCCTTTGGCTTTGCGCTTCTTCGGGCGCTCTGCTTGTGACTTTGCACCCCGCTTTTCTGCTGTGTTGGGCTCAGCTGTGGGGGCAAGGGGATTTGGGGGCGACCAGAAGTGGGGTTCCTGCATTCAATTGAAACCCCGACTCCAACCTCTTCAACGGAGCTCTGAGGTGGCTAGTGGGGCTGTCTGAGCCCCAGGGTGGGGTAGACCTGGGGTCACCAGTACCCTCTACCCCTCGAACTCGCTGGTATTGTCCCCTGCCATCGCAGGTGAGGGGTGCAGAGGGAGGAGCAGGGCCTGGGGACGATGGCTGGGGACTGGAGGTGCTGTGGAACTCACTTCCTCTTCTTGCTCCTCCAG
Seq C2 exon
GCTTCTGTGTCAATCTGGGATGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTATAGGCCTCTTGATCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474:ENSRNOT00000000554:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=NA C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGCTGATTCCTTCTCTC
R:
CGAGGGATCAAGAGGCCTATACT
Band lengths:
265-1533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]