HsaINT1029215 @ hg38
Intron Retention
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33297032-33298651:-
Coord C1 exon
chr6:33298455-33298651
Coord A exon
chr6:33297116-33298454
Coord C2 exon
chr6:33297032-33297115
Length
1339 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CCCCTTCCTTGCTCCTCCAGGCC
3' ss Score
12.2
Exon sequences
Seq C1 exon
GCGCCCCCATGGCCCGACCCCGCTGATTCCTTCACTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGAGCCCCCCCGGGGGAGTCGTACTGAGCAGCTTCCGAAGCCGGGACCCCGAAGAGGGTGGGGGCCCAGGTGGCCTGGTCGTGGGCGGGGGGCAGGAGGAAGAGGAGGAGGAAGAAGAAGAG
Seq A exon
GTGAGACGCGGGTGGTGGGAGGTAGGGGGCGTATGTATTTCTGAAGTCTCCACTTTTCTCTTGTCTCTGGGTCCCTACATCTCCTCCTCCTTGCCTCAGTTATTCTCGCGCCTCCCTGGGTGTCGGCCCGTTTCTCTGCTGCGGGGAGTCCTGGCGTCTCCGTGGTTCTCTGTCAGTGTGACTCAGGACCTGCCCGCAGGAACCTGCCCTGTTCCTGCCTGGAACTTCTGGCTGGCTGTCCTGTCCCTGCGGGTCTTTGGCCCTCCACCTCTGCCTGCCTGAGTGTGCCTACCTCTCTGAGCAGTCGTGTCTTGGTCCCTGTCTCCCTCCTTGTTTTTGTTTGGCGGGGAGGGGTTTGTTTCCACAGTAACCAGCTCCTCTGACTCTGGGATTGGGGAGGGAACCCTCAGATTTCGTGACCCCTCCTTCCCTCTCTCCCCCTTCCCCCCGCCCCCCCGCCCCGCCCCGGTCCTGGGTAGAGGCCGGGAAGCCACGGTTCTGGGACCTGGAGGAAAGATCCTAGGGTGGGTAGAGAGTGGTCATCTGTTTTCATTAGGGATTAATGGTGGTGGCCAGGAGCAGGATTTCGGGCCTCAGGAGGGGCCAGAATTTGGATTTGGGGCCCCGAGGCCCTAAACTCCTAGGTCCAGATCCTAGGTGAGGGCAGGTTGACTGGCAGGGCTGGTTTTTCGGGATCGGTCGGGGGAGGGGCTGGGGCCACGTGACTCTCTGAGTCTACCGCCCCCAACCCCCTATCATCCCACTTCCCCTTTTCCTTCCTGTACTGGGATTGGAGCTGCTACCTTCGGGGGTCCCTTAGGGCTGAGATAGTGGAGGCGCTACCCGAGGGACCAGGGTGAAAGGGGTCCTGAAAAAGACTAATTCTCTGGGCTGGTATAGTCCTTGGCCGGGAGGGGCGGGGCATGCGGCAGTGCCTGGACTGAGGTTTCAGCTACCCCTAGTCGCTGCCTCTGGCTTGCTGCCTCTCGCTTCCCTCTCCTGCCCTTTGTACCCTGCTTCTCTGTCGTGTGTGGGTTCAGCTCTGGGGAGAAGGGGCTTTGGGGGTCTCCAGGATCAGAATTCCTGTACTCCATCCACGCCTCCACTGCAGCCCCTTCGACTCCACCGGGGCCCTGAGGCGGCTGGGGTGGGGCTGTCTGGGCCCCAGTGGGGGAGACCTGGGGTCACCAGCTCCCCCAACCCTTCCTCGCACTCGCTGGTACTATGCCCTGCCACCACAGGTGAGGGGTACAGAGGGAGGAGCAGGGCCTGGGGTGAAGGCTGAGGGCAATGGGGGGTGGTGTGGAACTGTCTGACTTCCCCTTCCTTGCTCCTCCAG
Seq C2 exon
GCCCCTGTGTCCGTCTGGGATGAGGAGGAGGATGGTGCCGTGTTTACCGTCACAAGCCGCCAATATCGACCTCTTGATCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441:ENST00000497454:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=NA C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGCTGATTCCTTCACTC
R:
GGGATCAAGAGGTCGATATTGGC
Band lengths:
262-1601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains