HsaEX0053610 @ hg19
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
RAP1 interacting factor homolog (yeast) [Source:HGNC Symbol;Acc:23207]
Coordinates
chr2:152331371-152351840:+
Coord C1 exon
chr2:152331371-152331733
Coord A exon
chr2:152339713-152339849
Coord C2 exon
chr2:152351743-152351840
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTAATTTCTCCCTTTTATAGTTT
3' ss Score
9.08
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATATAATTGATCCTGTTGCTTTAGAAATTCCATTATCCAAAAACCTTCTGGCACAGATTAGTGCTCTTGCTCTTCAGCTGGATTCAGAAGATCTTCATAATTATTCAGGAAGCCAACTATTTGAAATGCACGAGAAACTAAGTTGTATGGCAAACTCTGTAATAAAAAATCTACAGTCACGTTGGAGATCACCATCCCATGAAAATTCTATTTAGTATTTTCAGAGAAAATTGAAGGTTTTTTTAAACATCACTGGATTTCTTGATTGAGGAAACAAGTTCTGAAATAATAGCACAATTTCAAAGAAGAGACTCTTTGCAAAGTTGATAACATTTCAAACCCTGAAGGACAGTGACTTATTAT
Seq A exon
TTTCTTGAAGATGGCTCTTTGCAGCCTACGTGGTAGTGGAGATATATACAAAGGACTTCCCTAGTATCGTTGGACCAACAAGCACAAGCAGATGGCAGGAAGATTAGAACATTGGATATTGATTGCCAGTTTTTAAG
Seq C2 exon
TGTCATTCTTGGAAACGTGGGAGATTTAGGAAATGACATTGAAGAGGAAGAATTCTGTTGAAATAGTGATTCTCAACGTGGGGTCCTTGGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345-'43-48,'43-45,49-48
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAGAAACTAAGTTGTATGGC
R:
TCCCACGTTTCCAAGAATGACA
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)