HsaEX0053611 @ hg38
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:151493805-151498213:+
Coord C1 exon
chr2:151493805-151493905
Coord A exon
chr2:151495229-151495326
Coord C2 exon
chr2:151497786-151498213
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACCTCGGTATCTCCCCTCAGTGT
3' ss Score
8.46
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCTTTCCATCTCAGGAGTAAAGGGTGTGGGGGTTGCTTTCCCCAGGTTCTCTTTGTATAACACCTGTGAGATACAAAGTCATGCCCGAAAGTCACTACGAG
Seq A exon
TGTCATTCTTGGAAACGTGGGAGATTTAGGAAATGACATTGAAGAGGAAGAATTCTGTTGAAATAGTGATTCTCAACGTGGGGTCCTTGGACAGCAAG
Seq C2 exon
GATGAGGAAAAAACACAGTCATCCAAGGAGCCAGAAGTTATATGCTGACAAAATGCCACCGACTACTTTAGTGGAAGCTGTTGTTGGGATAGGGAATCTGCACCCTCTAGAGAAGCAGGGACTTCAGCTGCTGAGGAAGGGCTGTCAGAGTTATCCATGTTATTTTTTTTCATTTTTGTGAGTACGGTGCCTCCTAAACAATCACATGAGGATTTGAGACTGTTAGAACTCGGTGTTGTTATCCACACAAATGGAAACATTCATTATTTTTAAAACATGTTTGTTTGTAAATATCAGATGAAGTAAAAAATTGACATTAACTGTATTATAGAAATGGGAAAGTATATCCTTTTGTAATATAAGATGTATTAGAAGCAAAGAAGGGAAATGGGCTTCAAACAAAAATAAATAAATGTAAAGATCAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345-'69-80,'69-79,70-80
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCTTTCCCCAGGTTCTC
R:
GGGTGCAGATTCCCTATCCCA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development