HsaEX0053612 @ hg19
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
RAP1 interacting factor homolog (yeast) [Source:HGNC Symbol;Acc:23207]
Coordinates
chr2:152355859-152362889:+
Coord C1 exon
chr2:152355859-152356054
Coord A exon
chr2:152359548-152359699
Coord C2 exon
chr2:152362724-152362889
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTACTTTTTTCACAGTTT
3' ss Score
8.41
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
TGATGGGGATTGGAATCCCTTTTCCAACGTTTTCTTTATACAACACCTGTATGACACAAGAAAGCATCCAGAAAAAACAAGAGCAGTCAAAACAGCCCTTTCATCTACCTTGTGGGGAACCTGGTATAAAACTACAGACGTCAGACAGAAAAGACAGATTCAACAAGTCAACCTCTCTGTTCAGGCACAGATCTGG
Seq A exon
TTTTAATGATGAACTCTACAATGCTAATTCTGGAAATGAAAAAGTACAATGGAAAGCATTAAGTTATATAACGCTGAGGAATCTTGTTAATTCTACTTATAGTATTTCAAATCTAGTCAAGTCACTGAAAATGTTCAAGTATAATCGGAAAT
Seq C2 exon
GTGTCTTTCCGATAGCCGTTCCTGGTGAGACATCCTCTTTATATAAAACCTGGGCATTCAGAATCAGGACAGTGTTAACACAGAAGAAAAGAAAACCCAGCAGTTCCTGGAGAAAGACTAGGACACATGGCTTTTGTGAAAACAAGACACTAGACGATGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345-'54-53,'54-51,55-53
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGTCAAAACAGCCCTT
R:
GCCATGTGTCCTAGTCTTTCTCC
Band lengths:
248-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)