HsaEX0053617 @ hg19
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
RAP1 interacting factor homolog (yeast) [Source:HGNC Symbol;Acc:23207]
Coordinates
chr2:152325155-152326378:+
Coord C1 exon
chr2:152325155-152325270
Coord A exon
chr2:152325568-152325621
Coord C2 exon
chr2:152326225-152326378
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATATCATTTCTACTTTATAGGAT
3' ss Score
9.05
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
ATTTCAGAAATGGCCAAAGAATCCATACCATGCCCAACAGAAAGTGTTTACCCACCATTGGTGAACTGTGTGGCACCAGTTGACATCATTTTACCTCAGATTACATCAAACATGTG
Seq A exon
GATGAAGTTTACAAAGATTACCAGCAAAACCACACAGCTGTTAAGTCATCACAT
Seq C2 exon
GGCAAGAGGCCTGGGACAACTCATTAGAGCTAAGAATATAAAAACTATTGGTGATTTGAGTACTCTTACAGCATCTGAAATAAAAACTCTTCCTATCCGTTCTCCAAAAGTGTCCAATGTAAAAAAGGCTCTCAGAATATATCATGAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGAATCCATACCATGCC
R:
GCTCTAATGAGTTGTCCCAGGC
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)