HsaEX0054117 @ hg19
Exon Skipping
Gene
ENSG00000170633 | RNF34
Description
ring finger protein 34, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17297]
Coordinates
chr12:121837902-121854180:+
Coord C1 exon
chr12:121837902-121838021
Coord A exon
chr12:121840545-121840610
Coord C2 exon
chr12:121853962-121854180
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTTTCTCTGAAAGGTG
3' ss Score
9.68
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TCGCCTCCCGGGGCGCGGTAATCACCGCCCAGAGGGAAGGAGGTCGGCAGTGTGAGGAGCTGCTATGGTGCTGAGTTTCCTGGTAGAGCCGGCCGAGCTGAGGCGGTCGCGGCCATGAAG
Seq A exon
GTGGGGGAGTGGTACTAAGGATCAAGTATACTGTTAAAAGAAAACAAAAACCCAAGCATGAGGAAG
Seq C2 exon
GCGGGTGCCACGTCTATGTGGGCTTCGTGCTGTGGGCTGCTGAATGAAGTCATGGGAACTGGAGCTGTCAGGGGCCAGCAGTCAGCATTTGCAGGAGCCACCGGTCCATTCAGATTTACACCAAACCCTGAGTTTTCCACCTACCCACCAGCAGCTACGGAAGGGCCCAACATAGTTTGTAAAGCCTGTGGGCTTTCATTTTCAGTCTTTAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170633_MULTIEX1-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGAGGAGCTGCTATGGT
R:
CTCCTGCAAATGCTGACTGCT
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)