HsaEX0054117 @ hg38
Exon Skipping
Gene
ENSG00000170633 | RNF34
Description
ring finger protein 34 [Source:HGNC Symbol;Acc:HGNC:17297]
Coordinates
chr12:121400142-121416377:+
Coord C1 exon
chr12:121400142-121400218
Coord A exon
chr12:121402742-121402807
Coord C2 exon
chr12:121416159-121416377
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTTTCTCTGAAAGGTG
3' ss Score
9.68
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TCGGCAGTGTGAGGAGCTGCTATGGTGCTGAGTTTCCTGGTAGAGCCGGCCGAGCTGAGGCGGTCGCGGCCATGAAG
Seq A exon
GTGGGGGAGTGGTACTAAGGATCAAGTATACTGTTAAAAGAAAACAAAAACCCAAGCATGAGGAAG
Seq C2 exon
GCGGGTGCCACGTCTATGTGGGCTTCGTGCTGTGGGCTGCTGAATGAAGTCATGGGAACTGGAGCTGTCAGGGGCCAGCAGTCAGCATTTGCAGGAGCCACCGGTCCATTCAGATTTACACCAAACCCTGAGTTTTCCACCTACCCACCAGCAGCTACGGAAGGGCCCAACATAGTTTGTAAAGCCTGTGGGCTTTCATTTTCAGTCTTTAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170633-'3-12,'3-1,4-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAGAGACTGATTCCTGA
R:
AAATCTGAATGGACCGGTGGC
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development