HsaEX0054369 @ hg38
Exon Skipping
Gene
ENSG00000214279 | SCART1
Description
scavenger receptor protein family member [Source:EntrezGene;Acc:619207]
Coordinates
chr10:133464606-133467353:+
Coord C1 exon
chr10:133464606-133465174
Coord A exon
chr10:133465251-133465565
Coord C2 exon
chr10:133467198-133467353
Length
315 bp
Sequences
Splice sites
3' ss Seq
GACCGCAGCCCCTTTTGCAGAGG
3' ss Score
2.69
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGACCTGGGGCGCCATGTGCAGCAATGCCCTGAAGGACCTCTCCTTGTCCATCATCTGCAAGCAGCTGGGGTGTGGGGTGTGGGGAGTGGGGCTGGCTGGAGAACAGGCCCTTCCCCTCTGCGGGCACCGGGACCGCCTGGGTGGACAACATCGAGTGCCGCAGGCTGCCCAACTCCACTCTGTGGCAATGCCCTTCCCACCCATGGCACCCGCACTCTTGCGACCTTCGAGAGCAGGTCTGGATTACCTGTGCAGGTGGGCATTAGAGGTCTCTGGGGGTGCCTGGGAAGAGGTTTATCTGTCCTGACAGGTCACTTACAGGGGATGCCATTCAATCAGAGCCTGGGCCTGGGGGTCACTAGGATCCACAGCCTTCCTTGTGAAGCTTCTCTGGGCACCGAAGCTCTCAGAGCTGCTGTTTAACCCGCAGGATTGTCAGAGGACAGGCCACAGGCTGCTGGGGAGCCCCTCAACTGCTCCTCCTGGCTCGGCTGCCCAG
Seq A exon
AGGAGGGCGCACTGCGCGTGCGCGGGGGCGAGGACCGCTGCTCCGGGCGCGTGGAGCTCTGGCACGCGGGCTCCTGGGGCACCGTGTGCGACGATGGCTGGGACCTGGCGGACGCGGAGGTCGTGTGCCGCCAGCTGGGCTGTGGTCGGGCCGTCGCCGCCCTGGGGGCCGCCGCCTTTGGCCCTGGCTCCGGGCCCGTGTGGCTGGACGAGGTGGGGTGCCGGGGCAGCGAGGCGTCCCTGTGGGGCTGCCCTGCGGAGCGGTGGGGACGCGGAGACCGCGCGCACGAGGAGGACGCGGGCGTGCGCTGCTGGG
Seq C2 exon
GTCTGGGAAGATCCGAGGTATCTCCTGGAGAAGCCATCTATGATGTCATTGGGGAAATGCCGCCAGCAGGACTGTACGAGGAAATCATGGAGGCCGAGGCTGTGCTCCAAGATGAGGAGGACGGAAGTGTGGTGAAGGTGGACACAGAAGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214279_MULTIEX1-7/9=6-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.033 C2=0.170
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=53.4)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGAGGTCTCTGGGGGTGC
R:
CTCATCTTGGAGCACAGCCTC
Band lengths:
354-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development