HsaEX0054369 @ hg19
Exon Skipping
Gene
ENSG00000214279 | RP11-108K14.4
Description
Putative scavenger receptor cysteine-rich domain-containing protein LOC619207 [Source:UniProtKB/Swiss-Prot;Acc:Q4G0T1]
Coordinates
chr10:135278610-135280857:+
Coord C1 exon
chr10:135278610-135278678
Coord A exon
chr10:135278755-135279069
Coord C2 exon
chr10:135280702-135280857
Length
315 bp
Sequences
Splice sites
3' ss Seq
GACCGCAGCCCCTTTTGCAGAGG
3' ss Score
2.69
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GATTGTCAGAGGACAGGCCACAGGCTGCTGGGGAGCCCCTCAACTGCTCCTCCTGGCTCGGCTGCCCAG
Seq A exon
AGGAGGGCGCACTGCGCGTGCGCGGGGGCGAGGACCGCTGCTCCGGGCGCGTGGAGCTCTGGCACGCGGGCTCCTGGGGCACCGTGTGCGACGATGGCTGGGACCTGGCGGACGCGGAGGTCGTGTGCCGCCAGCTGGGCTGTGGTCGGGCCGTCGCCGCCCTGGGGGCCGCCGCCTTTGGCCCTGGCTCCGGGCCCGTGTGGCTGGACGAGGTGGGGTGCCGGGGCAGCGAGGCGTCCCTGTGGGGCTGCCCTGCGGAGCGGTGGGGACGCGGAGACCGCGCGCACGAGGAGGACGCGGGCGTGCGCTGCTGGG
Seq C2 exon
GTCTGGGAAGATCCGAGGTATCTCCTGGAGAAGCCATCTATGATGTCATTGGGGAAATGCCGCCAGCAGGACTGTACGAGGAAATCATGGAGGCCGAGGCTGTGCTCCAAGATGAGGAGGACGGAAGTGTGGTGAAGGTGGACACAGAAGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214279_MULTIEX1-7/10=6-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.187 C2=0.170
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGACAGGCCACAGG
R:
GCTTCTGTGTCCACCTTCACC
Band lengths:
215-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)