HsaINT0094776 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:135278755-135279885:+
Coord C1 exon
chr10:135278755-135279069
Coord A exon
chr10:135279070-135279738
Coord C2 exon
chr10:135279739-135279885
Length
669 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CAAGACCTCTCCTTTCTCAGAGC
3' ss Score
7.17
Exon sequences
Seq C1 exon
AGGAGGGCGCACTGCGCGTGCGCGGGGGCGAGGACCGCTGCTCCGGGCGCGTGGAGCTCTGGCACGCGGGCTCCTGGGGCACCGTGTGCGACGATGGCTGGGACCTGGCGGACGCGGAGGTCGTGTGCCGCCAGCTGGGCTGTGGTCGGGCCGTCGCCGCCCTGGGGGCCGCCGCCTTTGGCCCTGGCTCCGGGCCCGTGTGGCTGGACGAGGTGGGGTGCCGGGGCAGCGAGGCGTCCCTGTGGGGCTGCCCTGCGGAGCGGTGGGGACGCGGAGACCGCGCGCACGAGGAGGACGCGGGCGTGCGCTGCTGGG
Seq A exon
GTGAGTGGGGGGCGGTGGGAAGTCGGTCATGGGGCCGGCAGAGGGCGCTGGGATGGAGTCAGTCTTGAGTGTCACTTCGGTGGGCAGGAGAGCTCGCCCAGGTGTTAGTGGGTTGGTTTCCACCCTGGGATTTTTCTGGGATAGGCTGATTTGCTGTGGAGGCCTGTTTGGGACATGCACTCCCTGGGGTTTCCCCCTAATCTTTTTTGGGAATTCCCTTTTGTTTATTCCAATCCTTGTTCATTTCGGGTATGTGTCACCTGGGTGTTGGCAGGTTCAGTTGTTCCCTGCACCTCATTCTCTTTGCAGAAAACAAACAGTTAACCACAGTGATGACCTTAGCAAAAGCAGCAGCAGTGGTAACTTTCCCTGAGCCACTCCCATTCTCTGTGCTCTGGTCACCTCTTGTGACTTGCCCTGGCATCTGCCTGGGGGCCATGTTTTACCAAGGAAGGGGGCTGTCCCTTGAAAGCAGACACCCCCAGTGGACACTAGCCATTTTGGGGTGCTCTGCACAGCTGAAACCAGCAGATGCCCCCCCAGCACTTCCGACTCGCAGGTCCTCCATGAGGGAGAGGGTGTGGCTGGGCCCTTGGAGCCACCCTGTCCTGCTGAGGGTGTGCAGGTCCCCCCCACCACCCAGCTGGCTCAAGACCTCTCCTTTCTCAG
Seq C2 exon
AGCCTGGCCCAGGCCCCCCACTGCCTGCAGCTCCCTTCCGGACATTCTGGGTGGTCAGTGTCGTCCTGGGATCCCTTCTTGGTCTTCTCCTTCTGGGCCTCATGGCTTTTCTGATTCTGCCTCGAGTCACACAAGCCATGCAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC619207:NR_002934:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGATGGCTGGGACCTGG
R:
GTGTGACTCGAGGCAGAATCA
Band lengths:
358-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)