HsaEX0054368 @ hg19
Exon Skipping
Gene
ENSG00000214279 | RP11-108K14.4
Description
Putative scavenger receptor cysteine-rich domain-containing protein LOC619207 [Source:UniProtKB/Swiss-Prot;Acc:Q4G0T1]
Coordinates
chr10:135272991-135280857:+
Coord C1 exon
chr10:135272991-135273674
Coord A exon
chr10:135278110-135278434
Coord C2 exon
chr10:135280702-135280857
Length
325 bp
Sequences
Splice sites
3' ss Seq
TGACTGTGCTTGCCTTGCAGAGT
3' ss Score
10.75
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CCGCGGATCCGTCCAGGTGGCGCTGAGCCGCGTGCGCTGTCTGGGCACCGAAACCCGCCTGACTCAGTGCAACGTGTCCGCGACCCTGCAGGAGCCCGCGGGGACCTCGCGGGACGCCGGCGTGGTGTGCTCCGGTGAGGTCGGAACCGCGTCCCCCATGGCCCGTCGCCACGGGATCCCGGGCGCCCTGACTCTGTCTCTCCACAGGGAGCCTCAGGGTGCGGCTGGCCGCGGGGCCGGGGCGCTGCACGGGGGCGCGTGGGGCACCGTGTGTGACGATGCCTGGGACCTGCGGGACGCGCACGTGGTCTGCAGGCAGCTGGGCTGTGGCCGCGCCCTGAGCGCCCTGGGGGCCGCACACTTCGGAGCCGGGGCAGGGCGCATCTGGCTGGACGAGCTGGGCTGCCAGGGCCACGAGTCTGCGCTGTGGCAGTGCCCGTCGGCGGGCTGGGGGCGGCACGACTGGAGGCACAAGGAGGACGCCGGCGTCTTCTGCTCAG
Seq A exon
AGTCGGTGGCTCTGAGGCTGCGAGGTGGGACCTGCTGCTGTGCTGGGTGGCTGGACGTGTTCTACAATGGGACCTGGGGCGCCATGTGCAGCAATGCCCTGAAGGACCTCTCCTTGTCCATCATCTGCAAGCAGCTGGGGTGTGGGGTGTGGGGAGTGGGGCTGGCTGGAGAACAGGCCCTTCCCCTCTGCGGGCACCGGGACCGCCTGGGTGGACAACATCGAGTGCCGCAGGCTGCCCAACTCCACTCTGTGGCAATGCCCTTCCCACCCATGGCACCCGCACTCTTGCGACCTTCGAGAGCAGGTCTGGATTACCTGTGCAG
Seq C2 exon
GTCTGGGAAGATCCGAGGTATCTCCTGGAGAAGCCATCTATGATGTCATTGGGGAAATGCCGCCAGCAGGACTGTACGAGGAAATCATGGAGGCCGAGGCTGTGCTCCAAGATGAGGAGGACGGAAGTGTGGTGAAGGTGGACACAGAAGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214279_MULTIEX1-5/10=4-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.014 C2=0.170
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGACGATGCCTGGG
R:
CTCATCTTGGAGCACAGCCTC
Band lengths:
348-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)