HsaINT0094774 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:135273382-135278678:+
Coord C1 exon
chr10:135273382-135273674
Coord A exon
chr10:135273675-135278109
Coord C2 exon
chr10:135278110-135278678
Length
4435 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACTGTGCTTGCCTTGCAGAGT
3' ss Score
10.75
Exon sequences
Seq C1 exon
GGAGCCTCAGGGTGCGGCTGGCCGCGGGGCCGGGGCGCTGCACGGGGGCGCGTGGGGCACCGTGTGTGACGATGCCTGGGACCTGCGGGACGCGCACGTGGTCTGCAGGCAGCTGGGCTGTGGCCGCGCCCTGAGCGCCCTGGGGGCCGCACACTTCGGAGCCGGGGCAGGGCGCATCTGGCTGGACGAGCTGGGCTGCCAGGGCCACGAGTCTGCGCTGTGGCAGTGCCCGTCGGCGGGCTGGGGGCGGCACGACTGGAGGCACAAGGAGGACGCCGGCGTCTTCTGCTCAG
Seq A exon
GTGAGCGGCCGTTGGGTATGGAATGATCATGCTGTTTTATTACGTACAGTCATGCGCACTTGCTTTCCAGAACAGCATCAAACTATCGGGAGCTGTTCTCTTCCCTGAATGCAGAACTTCCACAGTGGATTGGGTGAGGTTCCTGTTGGTATAGTAAGTGCTACCGGACAAAGTACTTTGGTTCCGTGCACCTGGGGAGCTGGTCAGCTTCCTGTCGCAGGTTGGCCCTGGGGCAGCCCCACCTGGGCTCATTTTCCGCCGTAACCAGCTCAAGTGCGCTTGAAGTTTCCATCCGAAATTCATATATATATATATATATTTATATATTTTAAAAAATATTTTATATTTATTTAAATATTTATTTATTTATTTATTTATTTATTTTGAGACGGTCTCACTGTGTTGCCCAGGCTGGAGTGCAGTGGCCCCATCACCGGTCACCGCAGTCTTGACCTCCTGTAGTCCAGGGATCCTTCAGCCTCAGCCTCCCAAGCTGCTGGGACTACAGAAGTGAGGCACTGCCGCTGGCTTCAGATTCTTAATTTTGATCCATATTTTGGTGTACTGGAGAACTTTTTGCAGACTTTTTTTTTTTTGACAAGATCTTGGTCAGGCTAGAGTGCAATGGTGCAATCTTGACTCAGTGCAACCTCTGCTTCCTGGGCTCAAACCATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACGGGCATGTGCCACCATGTCTGGCTAACGTTTATTTTTGTAGAGATGGAGTTTCACCATGTTGCCCAGGCCGGTCTCAAACTCCTGGACTCAAGCGATCCACCTGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACCGCACCTGACCATTTTGCAGACTATTTTTGAGATGGTGGATGAGCTTTATTATTATTATTATTATTATTCACACATACCTGAGCGTCTTTGTGTTCTGATCTTGTCCAGGTGTGGTCATTCTTGGGTGATGGAATTTTGTCATTTTGGGGGATGGGTTCTCTGGAGAAGCCTGTGAGTGGGTCACGGGCTGCCCACCTGACCTGCGGCCTCCTGAGCGGGTCACGGGCTGCCCATCTGACCTGCGGTCTCCTGAGAGGGTCACGGGCTGCCCATCTGACCTGTGGTCTCCCAGGGTATTTTCAGGCAACCCTGGGGGAGAGGCTGGATGCTGGCAGAGTCTCTGGCAGCTTATCCAAGTGTGGGCTCTTCTCATTGATTTTGGTTTATATTTTACTTTAGGAACGCTTTCTTCAGCGATATCTTGGATTATTACGTTTATTTCAATTACTGTGTTCTTTGTATGCAATGCTGGAGTCTCGTGAGTTTGAGCCTTCCCTATGCTTCTGAAATTAATTTTGGCATGACTCTTTCCCCAGGCATTCTTGGGGTGTTTCTCCAGGTGGCACCCACGTCACAATCTGTGTTTCTGTCGATTCTGCTCTTCAGTCCTTTGGTGTATTATTTCGCCCTCCTCACCTCGTCCATCATCTCATTTTTGTGTCTTTATTCTCGGCAGCTTGTTTTCTCCTAATGACATGATGCTCTGCTCTCATAAAAGGTCCATCTTTTTCTGGCATCTCAGTGAGAATGACAGGTCATTTTCTAGAACATTCTGCTGGTTTCTGTGGAAAGCGGCGGATGTTAGCCCTTCCTCTGCATCTTCCATGTTGTCCTTGCTCTCTGGTTTGCAGCATTTTCCTCCGGTGGCTGCTTTATTTGTTTTTCTGTGAAGCTTCATTCTGGGGACCCCATCTGAGCTGGCATCTACAGGCACCCGGCTGTCAGACCATCTGCTGGAGCCAGCATGTTGGGCACAGCCAGTTCAATTCCTGGGGCTGCCTCTTTTTCACCTGGGTCTCAGCTATGCCTCGGTCACTTCTGGCCCCTCCAGGCTCCTCAGGGTCCCTGCCTGACAGGGCTGCATCCCCCGGGTGGGGCGGGGCACTCGTGGCTCCTGCTGTCCCACGTGTGGGCAGGTGGACAGGCAGGCCGTGGAGCCCTGCTCAGCTCTGGGCCACCCACATGGCCTGCATTTTGTGCCTATGCTGCTGCTTTGCCCAAGGTCCTGTGCATACGTCCAGGGTACAAACTTTGATTGTTTTGGGAAACCAGATGGGACTGTTCATATCTGAGGGGCAGAAGCTATTTTAAAGAAGAATTAGAACAGTAATTTCTAGACATAGGTAGAAGATTTCTTTTGATAGACTTACAAAAATACTATATTGCTAATATCTTTGAGAGAATGAGATATAAAGTATGTTACATGTTATTAAAATTTGAGTCCAAAAAATTAGAAAGAAAAAACCATCTGTAATCCCAACACCCAGAGATAAAGCCATCGTGAATGCGTAACATATGTGAAATTAATGCTGAGTAACCAGCCCTGCCACAGGCAGCAGCAGCAAGGTGTGTGGCTCCGACCTCTGTGGTCATTGCCTTTGGCTGTGCTCAGCTGCTGGTTCTCCGTCCCAGCCGGGCTCCCTTAGTGCCTTCAGTCACTTGATGGTTAGGTGGAGCCTTGCTTCGGGGCCCTGGCTGAAGGCAGGAGTAGTGGAGGCTCTGTTCTGTCATGATCCAGCCTTGGTTCCAAAAATGATAGCAGTGTCAGCCTAGGAACAGGCACAGAGTCTCAGACCCTATTCCTTGACCCAAGTCCCAAGCCAGCCGCGATTCAAGGACTGGGGCCCAGACTCAGTGAGAGGGTGTGGAAACAGGCAGGGGATACTTATGGACACTTTTGTATTCTATTACAGTGTATTTCTTTCCAGTATTCTTTCTAAGCTTATTTTAATTAGATATGATCCTATCAGATGCAATTCATACCCAATGTTCTCCAAGTATCCTGGTATAGGTATTTTAAAAGCGTTATTACAGTGCTCCATGGCACAGCTTTAAAGGATTGTCTAACATGCCATTAGGTGACCATATTAGTCTTTTGGACTTTACACTGCTCCAAGGGTAACATTGAACATATTTGGGCACTGATCCCTCAGGACCAAAGCTATCTCTGAACATGGGGCTGAGGTACACACACACACACAGACACACACACACACTTAAATAATTACTGCAGTCAAGCTAATGAACATTCCACCATCTCACAAAGTTACGTTTGGTTTTGTGGTAAGAGCACCTAAAATCTACTTTCCTAGCAAACTTCCAGTGTACAATGCAATATTATTAACTACATTCCTCCTGCTGTATGTTGGGTTTCTAGATTTATTCATCCTGCACAGTTGTGTACCCTTTGACCTACATCTCCCCATTCCCCCACCACCTGCCCCTGGTAACCACATTCTATTGTTTTTACGTATTTGACTTTTTTTTTTTTTTTTTGCTCCCATATGTAAGTGGGATCATGCAGAATTTGTCTTTCCATTCCTGGTTTATTTCATTTAACATAATGTCCTCCAGGTTCATCCATGTTGTCACGGATCACATAATTTCCTTCTTATTTGAGGCTGAACAGTATTCCATAGCATCTATGTACCACATTTCTGTTTTCTTTTTTTAAATTGACAATCTTTGTACATCTCTATGGGGTTCATAGTGGTGTTTCAATCCATATAATGTGTAGTGATAAGATCAGGGTAATTGGCAAAGCCATCATCTCAGACATGTATCATTTCTTCGTGTTGGGAACATTCAATATCCTCCTTCCAGCGATTTGAAACCATATAATATACTGTTAATTACAGTCATCCTACAGTGCTATAGAATGCTAGAATTTATTCCTCTTATCCAGCTGTAATTTTGTATCTTTACAGATCTCCTCTTATCCCTCCCTCCCCCAACCCTTCCCAACCTCTAGTATCCTCTGTTCTGCTTTTCACTTCTAGGAGATCAACATTTTTAAGCTTCCATTTATGAGTGAGAACATGTGCTATTTAGCTTTCTAGCTTGTTTCACTTAACACAGTGTCCTCCAGTTCCATCCGTATTGCTGCAAATGATGGGATTTTATTGTTTTTTTAATGGCTGAGTAACTCCATTGTGTATATGCTGTATTTTCTCTATCCATGTATCTGTTGTTGGACATTACACTCATTCCACATCTTGGCTATTGTCAATAGTGCTGCGGTGAACCTGGGCGTGCAGTGAACCTGGGTGCTGCAGTGAACCTGGGCGTGCAGTGAACCTGGGCGTGCAGTGAACCTGGGTGCTGCAGTGAACCTGGGCGTGCAGTGAACCTGGGCGTGCAGATGTTTCTGCTGGGCTGATTTCATTTCCTCTGGGTCTATACACAGCAGTGGGATTGCTGGATTGTGTAGTAGCTCTAGTTTAAATTTTCTGAAGAAGCTCTATACTGTTTCTATAACTGATCTCAGTGCTGGGACCCCTTGAGCTTAGCCCCCTCCTTCTGAGACTGCCCATGGTGCCCAGGCAGGGCACTCCCTGGCCTGACTGTGCTTGCCTTGCAG
Seq C2 exon
AGTCGGTGGCTCTGAGGCTGCGAGGTGGGACCTGCTGCTGTGCTGGGTGGCTGGACGTGTTCTACAATGGGACCTGGGGCGCCATGTGCAGCAATGCCCTGAAGGACCTCTCCTTGTCCATCATCTGCAAGCAGCTGGGGTGTGGGGTGTGGGGAGTGGGGCTGGCTGGAGAACAGGCCCTTCCCCTCTGCGGGCACCGGGACCGCCTGGGTGGACAACATCGAGTGCCGCAGGCTGCCCAACTCCACTCTGTGGCAATGCCCTTCCCACCCATGGCACCCGCACTCTTGCGACCTTCGAGAGCAGGTCTGGATTACCTGTGCAGGTGGGCATTAGAGGTCTCTGGGGGTGCCTGGGAAGAGGTTTATCTGTCCTGACAGGTCACTTACAGGGGATGCCATTCAATCAGAGCCTGGGCCTGGGGGTCACTAGGATCCACAGCCTTCCTTGTGAAGCTTCTCTGGGCACCGAAGCTCTCAGAGCTGCTGTTTAACCCGCAGGATTGTCAGAGGACAGGCCACAGGCTGCTGGGGAGCCCCTCAACTGCTCCTCCTGGCTCGGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC619207:NR_002934:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)