RnoINT0131256 @ rn6
Intron Retention
Gene
ENSRNOG00000018978 | Scart1
Description
scavenger receptor family member expressed on T-cells 1 [Source:RGD Symbol;Acc:1307378]
Coordinates
chr1:212701553-212704535:+
Coord C1 exon
chr1:212701553-212701867
Coord A exon
chr1:212701868-212704217
Coord C2 exon
chr1:212704218-212704535
Length
2350 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TCCCTGTGCCCTTTCTACAGAAT
3' ss Score
10.37
Exon sequences
Seq C1 exon
GGAGCCTGCGCATGAGGCTGGCTGCGGGCCCAGGTCGATGTGCTGGGCGTGTGGAAGTATTCTATCAGGGCTCATGGGGCACTGTGTGCGATGATGCGTGGGACCTTCAGGACGCACAAGTGGTCTGTAGGCAACTGGACTGTGGCCACGCCCTCAGTGCTCCCGGGAATGCTCACTTTGGGGCAGGGACTGGGCGCATCTGGATGGATGAGCTGCACTGCTTGGGAAATGAGTCTTTGTTGTGGAAGTGCCAGTCAGGAAACTGGGGCCAACATGACTGCAGACACAAAGAAGATGCTGGAGTGTTCTGCTCAG
Seq A exon
GTGGGCGCCGCCTCTGGGCTAGCAGCTGAGTATCAAATGCATGGTTTAGTGTCCATGGTTACCTTTCCAGTTCAAGGGAGAACTCTTCCTGCATTCCTACTCCATGTAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACTTTTAAGTGAGCTTATATATTTCCCTATGGCTTTTCAAACATACCTAGTGTTATTTGTCTCTCCTTCCTCCCACTCTGTATGTATTACCTCCTCCCGTCTCCTTAATATGTCCCCATATCCCACTTCACAAACCTGTGTTCTATCCTTCTCTAGAAGAGTTCTCTCTGTCCCCACAATCCCTTTCTACTCTCCTGACTTTTGGTTACTTCAGGTTATATATTCTAATCTAAAGATTTGGAGCTATGATCCATAAAGAAAGAACATGTGACCTTTGCCTTTCTGGCTTTGAGTTTTACTCAGCAAAGCATTTCCAGTTCCAGCCATTGACTGCGTATTTCATGATTTCACTTTCCTTTATGGCTGATAGATGCCACTGTGCATATGCAATGAACTTTCAGTATCCACACACCATCTGAAGGACATCTAATCAGGGGGAGAATTCTCAAAAGGCTAAACATATATCTACCATGTAGTTAGCAATACTCTTCCTTGGGTGTATCCCCAAAGGAGCCAGCATTCTGCCACAGAGACACTTGCTTGGCAATGTTCACAGCCACTCTATCTACAGTAGCTAGGAAGTAAAGACAGCTGGGACGACTCCATATTTTTTAAAGGCTGGGTCTTTCTTTGTCATCCTGGCTGTGTTGGAACCCTCTATGTAGACCAGGCTGGTCTTGAACTCAAAAGAATCCTCTTGCCCTTGCCTTCTTGAGTCCTGGGATTAAAGTCATGTGCCACCACACCCAACTGATATCTCCAATTCTTAATTTTGATTTTGTCTTACTGTGTCCTGGAGAACACAGTTTTTTTAGAACACCCTTGAGGTGTTTGTGTTTGATCTGATCATGCCTGGAGCCATCATTTGTGAGTTTAGTATTTTGTTACTGTTCTCAGGAGAAGCCCCAGGAATTCTTGGCTGCCTTAGCATGGCTGCTCTTTAGACTGTGGGATCTCCATCTTTGTGCAAATGCATACCTGCTCACCAATGTTAGCCTCTTAGCTCACACTACAAAAGTACAGAGATAAACAAAAGAAAGAAGGAAGAAGAAATAGGCAACAATAAGGTATTAAAGGAGACAGTGGGCATGTGCACATGTTTATTTATTAAAAACGACCTTGAATTTATTAAATGACTTGTTCCCAAGTTAGAGAATGAACCTGAGCTGGATCTGGAGTTGCATGCCAGTAATTGAAGCCACCAAGTCATATACAGGTATCAACACAGACTGCATCCAAAAAACCCCAGAAAAGACATTTTACCAAAGTGTCTACCTGGAACCAAGCTTAGGATAGAACATTCAACTGAGACATATTGTCAATAGAAACTTGTTTTTCAATGATCCCATCTATAAAATTGTAGGAAAGGCCTGCATCTCCACCTCCTGACCATTATTTTATTTCTAGGTACTTGAATTAAAAGCTCACACATGTAAGAGCAACCGTGCAATATTCTTGTGCCCAGCTTATTTCAGTTAACATCGTATTCTTCAAGCTCTCTTATGGCGTTATGAGCTGCAGGATTTCCTTTTTAAATTTTCATTGTATGTATATATATGGGTGTCTTCATGCATGTATGTGCACCATGTATGTTCCTTGGGGCCTGGGAGGCCAGACCTAGACTTATGGACAGTTTCCAGCCACCATATGAGTCCTGGGAACTGAATGTTGGTTCATTATGGAAGTAGCAACAGTCTTAACTGTTGAACCATCTGTGCAGCCCCTTGCTATCCCTTTAGAGGGCTGGGAATATTCTTTTCTATCTCTGTTTCTGTTGTGCATATTTATATTTCTTTCCATATCTGAATCTACACAAAACATCTGTATTCATCTGTCACTGGACACATCTGTCATTTCCATGTTCTGGTTACTTCAGTCATCCTGTAAGCCAGCCATGGATCTCTCTCCTTGACTCATAGATTTAACTTGCCTTGGTACTGTGTATGTGTATATATATAGGCTGGGTTGCATGGCCCTAGTTTTAGACTCCCAGGGAACCCCTGTTATGCTTTCTATAGATGCTGGAAACTAGAAAAAAACCATATGCAAGTGATGCCAGGGTGTAATTGGGTCAAATGCCATTACATGCCTGTGACATTCTTAGATTGGCCTGTTCCTTCTGAGACCGTCAGAGGAGCCTGAAGGAGGGTCTCCCTGTGCCCTTTCTACAG
Seq C2 exon
AATCTGTGGCTCTGAGGCTGCGAGGTGGCACCAGTGGCTGCGTTGGATGGCTGGACGTGCTCTACAATGGATCCTGGGGTGCTGTGTGCAGCAATGCACTCAGAGACATCTCCTTGAGCATCATGTGCAGACAGCTGGGATGTGGGGACCAGGGCTGGCTGGAGAACAGGCCGTCTCCTGGGCCTGGCTTGGGAATCTCCTGGGTGGATAAGATCAAGTGTCGAAAGCTACACAATGCCACTCTGTGGCAGTGCCCTTCTGCCCCATGGAACCCACACTCCTGTACCCAGGAGGAGGAGGTCTGGATTAACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018978:ENSRNOT00000049269:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]