BtaINT0002212 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5D7]
Coordinates
chr26:25715903-25717632:-
Coord C1 exon
chr26:25717318-25717632
Coord A exon
chr26:25716218-25717317
Coord C2 exon
chr26:25715903-25716217
Length
1100 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCGAGTGGCTTGTCTTCCAGAGT
3' ss Score
5.17
Exon sequences
Seq C1 exon
GGAGCCTCCAGGTGCGCCTGGCCGCGGGGCCGGGCCGCTGTGCGGGGCGCGTGGAGCTGCTCCACGCGGGCGAGTGGGGCACCGTGTGTGACGACGGCTGGGACCTGCGGGACGCCCAGGTGGTGTGCCGGCAGCTGGGCTGCGGGCACGCGCTCGGCGCCCCGGGGGCCGCGCACTTCGGGGCCGGGGCCGGGCGCATCTGGATGGACGAGCTGGCCTGTGAGGGCCACGAGGCCGCGCTGTGGCGGTGCCCGTCGAGGGGCTGGGGCGGACACGACTGCGGCCACAAGGAGGACGCCGGTGCCCTTTGCTCAG
Seq A exon
GTGGGTGCTGAGACCCGAGTGCCGTCCCAGGGCCGCTCCTTGGCACTCATCTGGTGGGGGTGGGGGCTCTGCTCGTTCGTCCTGCTTCCGGGGAGAGGGTGTCTAGGCGCTGTCCACTTCACACTTCGCTCGTGGCCGTTCTGGTCTTTCTGTCCTTGGAGGCAGGTTTAACTTCCACTGTGTTTTCAGCTTGCAGCTCTTCCTTCCTCTGTGCTCGGGGCTCCTCAGGCAGCTGCTGGTTCTCGCTGGCGGGCAGGCCTCTGCAGGGGGCTGGCTGTTGGCAGGGGTGGGGACTCTGCTGTCCCGATTCCGCCTGGCAGCAGCGGGGTTCCCAGGGGAGATCAGAGGCAGGCAGGCGCTCATGAGGCCCAGGCGTGGAGCGGGCACCGGTCACCCTCACCCCGTGCGTTTGGCTGGCGGAAGGTCAGAGGTCAGCCCAGACCCAGGGCTGGGAGTACACTCGGTGAGGGGCGGGGCCGGGCGGGGGTCTGAGTGGCCGCTTTTATTCTGTCACAGGTGTAATTCCTGCCATTTATTTTCTAAGCTTAGTTTACTTCGTTACGGTCCCGTCAGATGCAATTCATGCCTCAATGCCTCGGTTTATCCCCATGTGTGTATTTTGATGTATTGCGGGCCCTTTTGACTTACTTTTAGAGGGCTGTGTCCTACTCCACTATGTGGTCATATGATAGTCGGCTTAACACACCCCTTGTTCCTGGGCTTTCGCCGCCCCAGGGTGACAAGACACTACTTGGGCGCTGACCAGCCAGGGCCAGTGACACACTCGGAGATCGGGCTAGTTCCTTTTTTGTTGTTGAATTTTTACAGTTGTTTAAAAGGGTTATTCTGTATGTGAGTGATTTCCAGGGACAGGTTTCTACAGTCAGTGGAGTTACTAGGGATTGCAGTGTTAGAGCTGGGGCTTAAATTGGCTCCCTGTGGGCAGCTGCTCCCGTCTTTGGGTGGGGGTGGATGGGGATGTGGGGTGGATGTGAGCTGGATGTCAGATGCCCTAGCTTGGCATGGGTCTTGGTGCTGGGAGCCCCTGGTTTTGGCCTCCTCCTTCAGAGACTGTCTGACCCGAGTGGCTTGTCTTCCAG
Seq C2 exon
AGTCAGTGGCCCTGAGGCTGCGAGGTGGTGCCGGGCCCTGTGCTGGGTGGTTGGACGTGTTCCACAACGGAACGTGGGGGGCCGTGTGCAGTAACGCCCTGAAGGACGCCTCCTTGTCCATCATCTGCCAGCAGCTGGGCTGTGGGGAGCGGGGCTGGCTGGAGAACAGGCCGGGGCACACTAGCCTGGGCACCTCCTGGGTGGACAACATCCAGTGCCGCCGGCTGCGGAGCTCCACGCTGTGGCAGTGCCCCTCAGCCCCCTGGCACCCGCACTCTTGCACCCGTGGAGAGGAGGTCTGGATCACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010522:ENSBTAT00000013918:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGACGACGGCTGG
R:
GATGATGGACAAGGAGGCGTC
Band lengths:
357-1457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]