GgaINT0045275 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:6870948-6871940:+
Coord C1 exon
chr7:6870948-6871284
Coord A exon
chr7:6871285-6871625
Coord C2 exon
chr7:6871626-6871940
Length
341 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TGGGTCTTTCTTCCTCACAGAGT
3' ss Score
9.55
Exon sequences
Seq C1 exon
CTGGGGCTTCTCCCCACTGCAGGGAGCCGGCGGGTCCGGCTGGTGGACGGGGCTGGGCGCTGTGCAGGGAGAGTGGAGATCTACTACCAGGGCCAATGGGGCACGGTCTGCGACGACGCCTGGGACACGGCCGACGCTGATGTTGTTTGCCGCCAGCTGAGCTGCGGGTGGGCTGTGGAGGCGGCCGGCTCCGCTCGGTTTGGCGAGGGCTCCGGGCAGATCTGGCTGGATGGTGTGAACTGCTCTGGGACTGAAGCTGCTCTCTGGGACTGTCATGTCCAGGCCTGGGGACAGCATGACTGTGGGCACAAGGAGGACGCGGGAGTTGTCTGCTCAG
Seq A exon
GTCTGTGCTGGGAGCAGAGCTGGTGGCCCTGGGGCAGGGGGGATGGGGAGAGGGGTGAGCCAAGCATGGACGATGCTAGCAAGGGGCCTCTGCATGAGCCTGTCCTGGGGATGTCTGCATGCACGTATATTGTTTGGCTCCATGGGGGTATCTGGGGAGCATGGCCACTCTGACAGTGAATGGGGAGGGTGGGGGTGCACATCTGGGACCTCTCCATTCTCAGGTGCTAAGGGGACTTGCTGGCCATGCTTCTGAAAGTGTAGGGTGCCCAGGAGTGCAGAGGAACCTCTGCTTCCCAGAGCTGGACTAGCCTGTTTGTCCTGGGTCTTTCTTCCTCACAG
Seq C2 exon
AGTTCATGGCCCTGAGGCTGGAGAACAAAGATGGCTGCTCCGGGCGCCTGCAGGTTTTCTATAACGGAACATGGGGGATTGTTTGCTCCAACTCTATGACTCCTCACACAGTGCCATTGGTGTGCAAGCAGCTGGGCTGTGGGGACAGTGGGATCCTGGAAATGAGTTCGCGCTACGATAAGCTTTCTGGCATTGCATGGCTGGATCACATCGAGTGTGGAAAGAGCAATAGCTCCTTCTGGCAGTGTCCTTCTGCACCCTGGGACCCACAGTCGTGTGATGATCTGCGAGATGAGACCAACATCACCTGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213:ENSGALT00000003467:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=86.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTACCAGGGCCAATGGG
R:
GTTGGAGCAAACAATCCCCCA
Band lengths:
350-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]