GgaINT0045275 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV85]
Coordinates
chr7:6902855-6903847:+
Coord C1 exon
chr7:6902855-6903191
Coord A exon
chr7:6903192-6903532
Coord C2 exon
chr7:6903533-6903847
Length
341 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TGGGTCTTTCTTCCTCACAGAGT
3' ss Score
9.55
Exon sequences
Seq C1 exon
CTGGGGCTTCTCCCCACTGCAGGGAGCCGGCGGGTCCGGCTGGTGGACGGGGCTGGGCGCTGTGCAGGGAGAGTGGAGATCTACTACCAGGGCCAATGGGGCACGGTCTGCGACGACGCCTGGGACACGGCCGACGCTGATGTTGTTTGCCGCCAGCTGAGCTGCGGGTGGGCTGTGGAGGCGGCCGGCTCCGCTCGGTTTGGCGAGGGCTCCGGGCAGATCTGGCTGGATGGTGTGAACTGCTCTGGGACTGAAGCTGCTCTCTGGGACTGTCATGTCCAGGCCTGGGGACAGCATGACTGTGGGCACAAGGAGGACGCGGGAGTTGTCTGCTCAG
Seq A exon
GTCTGTGCTGGGAGCAGAGCTGGTGGCCCTGGGGCAGGGGGGATGGGGAGAGGGGTGAGCCAAGCATGGACGATGCTAGCAAGGGGCCTCTGCATGAGCCTGTCCTGGGGATGTCTGCATGCACGTATATTGTTTGGCTCCATGGGGGTATCTGGGGAGCATGGCCACTCTGACAGTGAATGGGGAGGGTGGGGGTGCACATCTGGGACCTCTCCATTCTCAGGTGCTAAGGGGACTTGCTGGCCATGCTTCTGAAAGTGTAGGGTGCCCAGGAGTGCAGAGGAACCTCTGCTTCCCAGAGCTGGACTAGCCTGTTTGTCCTGGGTCTTTCTTCCTCACAG
Seq C2 exon
AGTTCATGGCCCTGAGGCTGGAGAACAAAGATGGCTGCTCCGGGCGCCTGCAGGTTTTCTATAACGGAACATGGGGGATTGTTTGCTCCAACTCTATGACTCCTCACACAGTGCCATTGGTGTGCAAGCAGCTGGGCTGTGGGGACAGTGGGATCCTGGAAATGAGTTCGCGCTACGATAAGCTTTCTGGCATTGCATGGCTGGATCACATCGAGTGTGGAAAGAGCAATAGCTCCTTCTGGCAGTGTCCTTCTGCACCCTGGGACCCACAGTCGTGTGATGATCTGCGAGATGAGACCAACATCACCTGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213:ENSGALT00000003467:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=86.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTACCAGGGCCAATGGG
R:
GTTGGAGCAAACAATCCCCCA
Band lengths:
350-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]