MmuEX6015035 @ mm10
Exon Skipping
Gene
ENSMUSG00000025461 | Cd163l1
Description
CD163 molecule-like 1 [Source:MGI Symbol;Acc:MGI:2443796]
Coordinates
chr7:140224710-140228430:+
Coord C1 exon
chr7:140224710-140225024
Coord A exon
chr7:140227857-140228174
Coord C2 exon
chr7:140228362-140228430
Length
318 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGCCTTTTCTACAGAAT
3' ss Score
9.88
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGAGCCTGCGCGTGAGGCTGGCTGCGGGCCCAGGTCGATGTGCTGGGCGTGTGGAGTTATTCTATCAGGGCTCCTGGGGCACTGTGTGTGATGATGCCTGGGACCTACAGGATGCACAAGTGGTCTGTAGGCAGCTGGACTGTGGCCACGCCCTCAGTGCTCCCCGGAATGCTCACTTTGGGGCGGGGACTGGGCACATCTGGATGGATGAGCTGCACTGCTTGGGAAATGAGTCTTCGTTGTGGAAGTGCCAGTCAGGAAGCTGGGGCCAACATGACTGCAGACACAAGGAGGATGCTGGAGTGTTCTGCTCAG
Seq A exon
AATCTGTGGCTCTGAGGCTTCGAGGTGGCACTAGTGGCTGCGTTGGATGGCTGGACGTGCTCTACAATGGGTCCTGGGGTGCTGTGTGCAGCAATGCACTCAGAGACATCTCCTTGAGCATCATCTGCAGACAGCTGGGATGTGGGGACCAGGGCTGGCTGGAGAACAGGCCTTCTTCTGGAGCTGGCCTGGGAATCTCCTGGGTGGATAATATCAAGTGTCGAAATCTACACAATGCCACCCTGTGGCAATGCCCTTCTGCCCCATGGAACCCGCACTCCTGCACCCAGGAGGAGGAGGTCTGGATTAACTGTGAAG
Seq C2 exon
GAACACCACAGATAGCTCTCCAGGACCCTGCACAGACCCCAAACTGCTCTTCTCCATTTGGCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025461-'1-17,'1-7,10-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGGCGTGTGGAGTTATT
R:
AGGCAGCCAAATGGAGAAGAG
Band lengths:
342-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types