RnoEX6005459 @ rn6
Exon Skipping
Gene
ENSRNOG00000018978 | Scart1
Description
scavenger receptor family member expressed on T-cells 1 [Source:RGD Symbol;Acc:1307378]
Coordinates
chr1:212701553-212704770:+
Coord C1 exon
chr1:212701553-212701867
Coord A exon
chr1:212704218-212704535
Coord C2 exon
chr1:212704702-212704770
Length
318 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTGCCCTTTCTACAGAAT
3' ss Score
10.37
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGAGCCTGCGCATGAGGCTGGCTGCGGGCCCAGGTCGATGTGCTGGGCGTGTGGAAGTATTCTATCAGGGCTCATGGGGCACTGTGTGCGATGATGCGTGGGACCTTCAGGACGCACAAGTGGTCTGTAGGCAACTGGACTGTGGCCACGCCCTCAGTGCTCCCGGGAATGCTCACTTTGGGGCAGGGACTGGGCGCATCTGGATGGATGAGCTGCACTGCTTGGGAAATGAGTCTTTGTTGTGGAAGTGCCAGTCAGGAAACTGGGGCCAACATGACTGCAGACACAAAGAAGATGCTGGAGTGTTCTGCTCAG
Seq A exon
AATCTGTGGCTCTGAGGCTGCGAGGTGGCACCAGTGGCTGCGTTGGATGGCTGGACGTGCTCTACAATGGATCCTGGGGTGCTGTGTGCAGCAATGCACTCAGAGACATCTCCTTGAGCATCATGTGCAGACAGCTGGGATGTGGGGACCAGGGCTGGCTGGAGAACAGGCCGTCTCCTGGGCCTGGCTTGGGAATCTCCTGGGTGGATAAGATCAAGTGTCGAAAGCTACACAATGCCACTCTGTGGCAGTGCCCTTCTGCCCCATGGAACCCACACTCCTGTACCCAGGAGGAGGAGGTCTGGATTAACTGTGAAG
Seq C2 exon
GACTGCCACAGATAGGTTCACAGGAGCCCGCACAGACCCCTAACTGCTCTTCCCCACTTGGCTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018978-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGCGTGTGGAAGTATTC
R:
CTAAGCAGCCAAGTGGGGAAG
Band lengths:
343-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]