BtaEX6100676 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5D7]
Coordinates
chr26:25715287-25717632:-
Coord C1 exon
chr26:25717318-25717632
Coord A exon
chr26:25715903-25716217
Coord C2 exon
chr26:25715287-25715558
Length
315 bp
Sequences
Splice sites
3' ss Seq
CCGAGTGGCTTGTCTTCCAGAGT
3' ss Score
5.17
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGAGCCTCCAGGTGCGCCTGGCCGCGGGGCCGGGCCGCTGTGCGGGGCGCGTGGAGCTGCTCCACGCGGGCGAGTGGGGCACCGTGTGTGACGACGGCTGGGACCTGCGGGACGCCCAGGTGGTGTGCCGGCAGCTGGGCTGCGGGCACGCGCTCGGCGCCCCGGGGGCCGCGCACTTCGGGGCCGGGGCCGGGCGCATCTGGATGGACGAGCTGGCCTGTGAGGGCCACGAGGCCGCGCTGTGGCGGTGCCCGTCGAGGGGCTGGGGCGGACACGACTGCGGCCACAAGGAGGACGCCGGTGCCCTTTGCTCAG
Seq A exon
AGTCAGTGGCCCTGAGGCTGCGAGGTGGTGCCGGGCCCTGTGCTGGGTGGTTGGACGTGTTCCACAACGGAACGTGGGGGGCCGTGTGCAGTAACGCCCTGAAGGACGCCTCCTTGTCCATCATCTGCCAGCAGCTGGGCTGTGGGGAGCGGGGCTGGCTGGAGAACAGGCCGGGGCACACTAGCCTGGGCACCTCCTGGGTGGACAACATCCAGTGCCGCCGGCTGCGGAGCTCCACGCTGTGGCAGTGCCCCTCAGCCCCCTGGCACCCGCACTCTTGCACCCGTGGAGAGGAGGTCTGGATCACCTGTGCAG
Seq C2 exon
AGGAGGGCGAGCTGCGCGTGCGCGGGGGTGAGGACCGCTGCTCGGGCCGTGTGGAGCTCTGGCACGCTGGCTCCTGGGGCACCGTGTGTGATGACTCCTGGGACCTGGCGGACGCCGAGGTCGTGTGCCGGCAGCTGGGGTGCGGCCGGGCTGTGGACGCCGTGGCGGGGGCTGCCTTTGGACCAGGCTCGGGGCCCGTGTGGCTGGATGAGGTGGGGTGCCGGGGCAGCGAGGCCTCCCTGTGGGGCTGCCCGGCGCAGCCGTGGGGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010522-'10-12,'10-10,11-12=AN
Average complexity
A_C3
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=PU(92.2=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGGATGGACGAGCTG
R:
GGCACCCCACCTCATCCA
Band lengths:
342-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]