GgaEX1000438 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV85]
Coordinates
chr7:6902855-6904312:+
Coord C1 exon
chr7:6902855-6903191
Coord A exon
chr7:6903533-6903847
Coord C2 exon
chr7:6904256-6904312
Length
315 bp
Sequences
Splice sites
3' ss Seq
TGGGTCTTTCTTCCTCACAGAGT
3' ss Score
9.55
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
CTGGGGCTTCTCCCCACTGCAGGGAGCCGGCGGGTCCGGCTGGTGGACGGGGCTGGGCGCTGTGCAGGGAGAGTGGAGATCTACTACCAGGGCCAATGGGGCACGGTCTGCGACGACGCCTGGGACACGGCCGACGCTGATGTTGTTTGCCGCCAGCTGAGCTGCGGGTGGGCTGTGGAGGCGGCCGGCTCCGCTCGGTTTGGCGAGGGCTCCGGGCAGATCTGGCTGGATGGTGTGAACTGCTCTGGGACTGAAGCTGCTCTCTGGGACTGTCATGTCCAGGCCTGGGGACAGCATGACTGTGGGCACAAGGAGGACGCGGGAGTTGTCTGCTCAG
Seq A exon
AGTTCATGGCCCTGAGGCTGGAGAACAAAGATGGCTGCTCCGGGCGCCTGCAGGTTTTCTATAACGGAACATGGGGGATTGTTTGCTCCAACTCTATGACTCCTCACACAGTGCCATTGGTGTGCAAGCAGCTGGGCTGTGGGGACAGTGGGATCCTGGAAATGAGTTCGCGCTACGATAAGCTTTCTGGCATTGCATGGCTGGATCACATCGAGTGTGGAAAGAGCAATAGCTCCTTCTGGCAGTGTCCTTCTGCACCCTGGGACCCACAGTCGTGTGATGATCTGCGAGATGAGACCAACATCACCTGCAGTG
Seq C2 exon
GGAGACAGCCAGGAAGGCCTCTGGTGGCAGCATGCCCTAACTCCACCAGTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=86.7)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTCCCCACTGCAGG
R:
CACCAGAGGCCTTCCTGG
Band lengths:
358-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]