GgaEX1000438 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:6870948-6872807:+
Coord C1 exon
chr7:6870948-6871284
Coord A exon
chr7:6871626-6871940
Coord C2 exon
chr7:6872493-6872807
Length
315 bp
Sequences
Splice sites
3' ss Seq
TGGGTCTTTCTTCCTCACAGAGT
3' ss Score
9.55
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
CTGGGGCTTCTCCCCACTGCAGGGAGCCGGCGGGTCCGGCTGGTGGACGGGGCTGGGCGCTGTGCAGGGAGAGTGGAGATCTACTACCAGGGCCAATGGGGCACGGTCTGCGACGACGCCTGGGACACGGCCGACGCTGATGTTGTTTGCCGCCAGCTGAGCTGCGGGTGGGCTGTGGAGGCGGCCGGCTCCGCTCGGTTTGGCGAGGGCTCCGGGCAGATCTGGCTGGATGGTGTGAACTGCTCTGGGACTGAAGCTGCTCTCTGGGACTGTCATGTCCAGGCCTGGGGACAGCATGACTGTGGGCACAAGGAGGACGCGGGAGTTGTCTGCTCAG
Seq A exon
AGTTCATGGCCCTGAGGCTGGAGAACAAAGATGGCTGCTCCGGGCGCCTGCAGGTTTTCTATAACGGAACATGGGGGATTGTTTGCTCCAACTCTATGACTCCTCACACAGTGCCATTGGTGTGCAAGCAGCTGGGCTGTGGGGACAGTGGGATCCTGGAAATGAGTTCGCGCTACGATAAGCTTTCTGGCATTGCATGGCTGGATCACATCGAGTGTGGAAAGAGCAATAGCTCCTTCTGGCAGTGTCCTTCTGCACCCTGGGACCCACAGTCGTGTGATGATCTGCGAGATGAGACCAACATCACCTGCAGTG
Seq C2 exon
ACAGGGAGAAGATCCGTGCTGTGGGAGGCAAGGACAGATGCTCAGGCAGAGTGGAGATCTGGCACCACGGCTCCTGGGGGACAGTGTGTGATGACTCATGGGACATGCATGATGCTGAGGTGGTGTGCCGGCAGCTGGGCTGCGGCCCTGCAGTGTCTGCCCTGGCTGAGGCTGCATTTGGGGAGGGTACAGGACTCATCTGGCTGGAGCAAGTGGAGTGCAAAGGGACGGAGCTATCACTGCAGGACTGCTGGGCCCGGCCTGGAGACAGTGGTGTCTGCCGACATAAGGAAGATGTTGGAGTGCATTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213-'4-7,'4-5,5-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=86.7)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=92.5),PF081316=Defensin_3=WD(100=25.5),PF118373=DUF3357=PU(1.5=0.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACTGCTCTGGGACTGA
R:
GATAGCTCCGTCCCTTTGCAC
Band lengths:
342-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]