HsaEX6064969 @ hg38
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr12:7369357-7374756:-
Coord C1 exon
chr12:7374442-7374756
Coord A exon
chr12:7373320-7373640
Coord C2 exon
chr12:7369357-7369665
Length
321 bp
Sequences
Splice sites
3' ss Seq
AGTTTTGTATTTCTCTGTAGAAT
3' ss Score
8.73
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AGGACAAACGGCTCCGCCTAGTGGATGGGGACAGCCGCTGTGCCGGGAGAGTAGAGATCTATCACGACGGCTTCTGGGGCACCATCTGTGATGACGGCTGGGACCTGAGCGATGCCCACGTGGTGTGTCAAAAGCTGGGCTGTGGAGTGGCCTTCAATGCCACGGTCTCTGCTCACTTTGGGGAGGGGTCAGGGCCCATCTGGCTGGATGACCTGAACTGCACAGGAATGGAGTCCCACTTGTGGCAGTGCCCTTCCCGCGGCTGGGGGCAGCACGACTGCAGGCACAAGGAGGACGCAGGGGTCATCTGCTCAG
Seq A exon
AATTCACAGCCTTGAGGCTCTACAGTGAAACTGAAACAGAGAGCTGTGCTGGGAGATTGGAAGTCTTCTATAACGGGACCTGGGGCAGCGTCGGCAGGAGGAACATCACCACAGCCATAGCAGGCATTGTGTGCAGGCAGCTGGGCTGTGGGGAGAATGGAGTTGTCAGCCTCGCCCCTTTATCTAAGACAGGCTCTGGTTTCATGTGGGTGGATGACATTCAGTGTCCTAAAACGCATATCTCCATATGGCAGTGCCTGTCTGCCCCATGGGAGCGAAGAATCTCCAGCCCAGCAGAAGAGACCTGGATCACATGTGAAG
Seq C2 exon
ATAGAATAAGAGTGCGTGGAGGAGACACCGAGTGCTCTGGGAGAGTGGAGATCTGGCACGCAGGCTCCTGGGGCACAGTGTGTGATGACTCCTGGGACCTGGCCGAGGCGGAAGTGGTGTGTCAGCAGCTGGGCTGTGGCTCTGCTCTGGCTGCCCTGAGGGACGCTTCGTTTGGCCAGGGAACTGGAACCATCTGGTTGGATGACATGCGGTGCAAAGGAAATGAGTCATTTCTATGGGACTGTCACGCCAAACCCTGGGGACAGAGTGACTGTGGACACAAGGAAGATGCTGGCGTGAGGTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675-'32-35,'32-34,33-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=89.8)
C2:
PF0053013=SRCR=WD(100=94.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCTGGATGACCTGAACT
R:
ACTCATTTCCTTTGCACCGCA
Band lengths:
345-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains