MmuEX6006849 @ mm9
Exon Skipping
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124268860-124275590:+
Coord C1 exon
chr6:124268860-124269174
Coord A exon
chr6:124270373-124270696
Coord C2 exon
chr6:124275279-124275590
Length
324 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTTTTTTTCCCCCAGAGT
3' ss Score
11.48
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CAAGTGGCCAGCTTCGCTTGGTAGGTGGAGGTGGTCGCTGCGCTGGAAGAGTGGAGGTCTACCACGAGGGCTCTTGGGGCACCGTCTGTGATGACAATTGGGATATGACTGATGCCAATGTGGTGTGCAAGCAGCTGGACTGTGGCGTGGCAATTAACGCCACTGGCTCTGCTTACTTCGGGGAAGGAGCAGGAGCTATCTGGCTAGACGAAGTCATCTGCACTGGGAAAGAGTCTCATATTTGGCAGTGCCATTCACATGGCTGGGGACGCCATAACTGCAGGCACAAAGAAGATGCAGGTGTTATCTGCTCCG
Seq A exon
AGTTCATGTCTCTGAGGCTGACCAACGAAGCCCACAAAGAAAACTGCACAGGTCGCCTTGAAGTGTTTTACAATGGTACATGGGGCAGTATTGGCAGTAGCAATATGTCTCCAACCACTGTGGGGGTGGTGTGCCGTCAGCTGGGCTGTGCAGACAACGGGACTGTGAAACCCATACCTTCAGACAAGACACCATCCAGGCCCATGTGGGTAGATCGTGTGCAGTGTCCAAAAGGAGTTGACACTTTGTGGCAGTGCCCCTCGTCACCTTGGAAACAGAGACAGGCCAGCCCCTCCTCCCAGGAGTCCTGGATCATCTGTGACA
Seq C2 exon
ACAAAATAAGACTCCAGGAAGGGCATACAGACTGTTCTGGACGTGTGGAGATCTGGCACAAAGGTTCCTGGGGAACAGTGTGTGATGACTCCTGGGATCTTAATGATGCTAAGGTTGTATGTAAGCAGTTGGGCTGTGGCCAAGCTGTGAAGGCACTAAAAGAAGCAGCATTTGGTCCAGGAACTGGGCCCATATGGCTCAATGAAATTAAGTGTAGAGGGAATGAGTCTTCCCTGTGGGATTGTCCTGCCAAACCGTGGAGTCACAGCGACTGTGGGCACAAAGAAGATGCTTCCATCCAGTGCCTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.092 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=89.9)
C2:
PF0053013=SRCR=WD(100=93.3),PF063657=CD34_antigen=PU(10.0=8.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGCACAAAGAAGATGCA
R:
GAGGCACTGGATGGAAGCATC
Band lengths:
345-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: