HsaEX6064982 @ hg19

Exon Skipping

Gene

ENSG00000177575 | CD163

Description

CD163 molecule [Source:HGNC Symbol;Acc:1631]

Coordinates

chr12:7635963-7639409:-

Coord C1 exon

chr12:7639095-7639409

Coord A exon

chr12:7637692-7638012

Coord C2 exon

chr12:7635963-7636271

Length

321 bp

Sequences

Splice sites

3' ss Seq

AATTCTATGTTTCGCTGCAGAAT

3' ss Score

8.48

5' ss Seq

ACAGTGAGT

5' ss Score

8.34

Exon sequences

Seq C1 exon

AGAGTGGTCAACTTCGCCTGGTAAATGGAGGAGGTCGCTGTGCTGGGAGAGTAGAGATCTATCATGAGGGCTCCTGGGGCACCATCTGTGATGACAGCTGGGACCTGAGTGATGCCCACGTGGTTTGCAGACAGCTGGGCTGTGGAGAGGCCATTAATGCCACTGGTTCTGCTCATTTTGGGGAAGGAACAGGGCCCATCTGGCTGGATGAGATGAAATGCAATGGAAAAGAATCCCGCATTTGGCAGTGCCATTCACACGGCTGGGGGCAGCAAAATTGCAGGCACAAGGAGGATGCGGGAGTTATCTGCTCAG

Seq A exon

AATTCATGTCTCTGAGACTGACCAGTGAAGCCAGCAGAGAGGCCTGTGCAGGGCGTCTGGAAGTTTTTTACAATGGAGCTTGGGGCACTGTTGGCAAGAGTAGCATGTCTGAAACCACTGTGGGTGTGGTGTGCAGGCAGCTGGGCTGTGCAGACAAAGGGAAAATCAACCCTGCATCTTTAGACAAGGCCATGTCCATTCCCATGTGGGTGGACAATGTTCAGTGTCCAAAAGGACCTGACACGCTGTGGCAGTGCCCATCATCTCCATGGGAGAAGAGACTGGCCAGCCCCTCGGAGGAGACCTGGATCACATGTGACA

Seq C2 exon

ACAAGATAAGACTTCAGGAAGGACCCACTTCCTGTTCTGGACGTGTGGAGATCTGGCATGGAGGTTCCTGGGGGACAGTGTGTGATGACTCTTGGGACTTGGACGATGCTCAGGTGGTGTGTCAACAACTTGGCTGTGGTCCAGCTTTGAAAGCATTCAAAGAAGCAGAGTTTGGTCAGGGGACTGGACCGATATGGCTCAATGAAGTGAAGTGCAAAGGGAATGAGTCTTCCTTGTGGGATTGTCCTGCCAGACGCTGGGGCCATAGTGAGTGTGGGCACAAGGAAGACGCTGCAGTGAATTGCACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000177575-'9-11,'9-10,10-11=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF0053013=SRCR=WD(100=92.5)

A:

PF0053013=SRCR=WD(100=90.7)

C2:

PF0053013=SRCR=WD(100=100.0),PF0168214=DB=PU(60.3=90.5),PF135841=BatD=PU(18.5=40.5),PF063657=CD34_antigen=PU(8.7=21.4),PF066977=DUF1191=PU(28.4=69.0),PF151021=TMEM154=PU(17.0=35.7),PF118373=DUF3357=PU(8.6=16.7),PF097774=OSTMP1=PU(13.9=26.2)

Main Inclusion Isoform:

ENSP00000352071