BtaEX0007873 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019669 | CD163
Description
Bos taurus CD163 molecule (CD163), mRNA. [Source:RefSeq mRNA;Acc:NM_001163413]
Coordinates
chr5:102269785-102278444:+
Coord C1 exon
chr5:102269785-102270099
Coord A exon
chr5:102274297-102274617
Coord C2 exon
chr5:102278269-102278444
Length
321 bp
Sequences
Splice sites
3' ss Seq
TGCTATTTATTTCACCCCAGAGT
3' ss Score
6.77
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGAGTGGACAGCTCCGCCTGGTAAATGGAGGTGGGCGTTGTGCTGGGAGAATAGAGGTCTATCATGAGGGCTCCTGGGGCACCATCTGTGATGACAGCTGGGACCTGGATGATGCCCACGTGGTGTGCAGGCAGCTGGGCTGCGGTGTGGCCATTAATGCCACAGGTTCTGCTCATTTTGGGGAAGGATCAGGGCCCATCTGGCTGGATGAGGTGAACTGTAATGGAAAAGAACCTCGCATTTCTCAGTGCCGTTCCCATGGCTGGGGGCGGCAGAACTGCAGGCATAAGGAGGATGCAGGAGTTATCTGCTCAG
Seq A exon
AGTTCATGTCTCTCAGACTCATCAGTGACAGCAGCAGCGAGACCTGTGCAGGGCGCCTGGAAGTTTTTTACAACGGAGCTTGGGGCAGCGTGGGCAAGAGCGACATGTCTGCAACCACGGTGGGGGTGGTATGCAGGCAGCTCGGCTGTACTGACAAAGGGAGTATCAGACCAGCACCTTCAGACAAGGTGGAGAACAGGTACATGTGGGTGGACAATGTCCGGTGTCCTAAGGGACCTGAAACCTTATGGCAGTGCCCATCATCTCCGTGGAAGAGGAGACTGGCCAGCCCCTCAGAGGAGACCTGGATCACATGTGCTG
Seq C2 exon
TTTCCTCAAGAGGAGAGAACTCTGTCCACGAAATTCAATACCGGGAGATGAATTCTTGCCTAAAAGCAGATGATCTGGACCTATATAATTCCTCAGGTCTGTGGGTTCTTAGAGGGTCCATAGCCCTGGGGTTCAGACTGGTAACTGCAGCTGAGGCTGAGAGGCATTCTACTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019669_MULTIEX1-7/12=6-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=90.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAATGGAGGTGGGCGTTGT
R:
GGCAAGAATTCATCTCCCGGT
Band lengths:
355-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development