RnoEX6015010 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156765301-156778772:+
Coord C1 exon
chr4:156765301-156765615
Coord A exon
chr4:156767018-156767338
Coord C2 exon
chr4:156778461-156778772
Length
321 bp
Sequences
Splice sites
3' ss Seq
GAAGTTGTTCTTTTCCCCAGAGT
3' ss Score
7.69
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CAAGTGGTCAACTCCGCTTGGTAGGTGGAGGTGGTCGCTGCGCTGGGAGAGTAGAGGTCTACCATGAGGGCTCTTGGGGCACCATCTGTGATGACAGCTGGGATCTGACGGATGCCAATGTGGTGTGCAAGCAGCTGGACTGTGGCGTGGCTATTAATGCCACTGGTTCTGCCTACTTTGGGGAAGGGACAGGAGATATCTGGCTAGACGAAATTGACTGCAGTGGAAAAGAGTCTCATATCTGGCAGTGCCATTCACATGGCTGGGGACGCCATAACTGCAGGCACAAGGAAGATGCAGGTGTTGTCTGCTCGG
Seq A exon
AGTTCATGTCTCTGAGGCTGACCAATGAAGCCCACAGAGTGAACTGTACAGGCCGTCTGGAAGTGTTTTACAATGGTACATGGGGCAGTATTGGCAGCAGCAATATGTCTCCAACCACTGTGGGGGTGGTGTGCCGTCAGCTGGGCTGTGCAGACAATGGAACAGTGAAACCTACATCTTCAGACAAGACACCAACCAGGCCCATGTGGACAGATAGTGTGCAGTGTCCAAAAGGAGTTGACACTTTGTGGCAGTGCCCCTCATCACCTTGGAAACAGAGACAAGCCAGCCCCTCCCAGGAGTCCTGGATTGTCTGTGACG
Seq C2 exon
ACAAAATAAGACTACAGGAAGGGCATACAGACTGTTCTGGACGTGTGGAGATCTGGCATAGAGGTTCCTGGGGAACAGTGTGTGATGACTCCTGGGATCTTAATGATGCTGAGGTTGCATGTAAGCAGCTGGGCTGTGGTCAAGCTGTGGAGGCACTAAAAGAAGCAGCATTTGGTCCAGGAACTGGGCCCATATGGCTGAATGAAATGAAGTGTAGAGGGAATGAGTCTTCCCTGTGGGATTGTCCTGCCAGACCATGGAGTCACAGCGACTGCGGGCACAAAGAAGATGCTTCTGTGAAGTGCCTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'10-15,'10-10,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=89.8)
C2:
PF0053013=SRCR=WD(100=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACTCCGCTTGGTAGGTG
R:
TCCACACGTCCAGAACAGTCT
Band lengths:
358-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]