GgaEX0021519 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:80923364-80930823:-
Coord C1 exon
chr1:80930509-80930823
Coord A exon
chr1:80924159-80924473
Coord C2 exon
chr1:80923364-80923426
Length
315 bp
Sequences
Splice sites
3' ss Seq
TTTTATATCCTCACTTTCAGAGT
3' ss Score
10.31
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ACAGCCAGCAGATCAGGCTGGTGAATGGAACAAAACGCTGTGCTGGGAGAGTGGAGCTTTATCATGATGGCATCTGGGGCACTATCTGTGATGATAACTGGGATCTATCAGATGCAAATGTTGTTTGCAGACAGCTTGGATGTGGATATGCCATCAAGGCATTAAACTCTGCTCATTATGGAGTAGGCTCGGGGCAAATCTGGCTGGATGATGTGAACTGCACTGGGTCTGAATCCAATATCTGGGCATGTCCCTCTAGGGTATGGGGTCATCACAACTGCCAACACAAAGAAGACGCTGGAGTTCTATGCTCAG
Seq A exon
AGTTCCTGTCTCTGAGGCTGGCGAATGGCAGTGGCTGTGCTGGACGGCTAGAAGTTTTCTACAATGGGACATGGGGGAGCATTTGCTCCAATCGTATGTCTCAACTCACTGCAGTAACTGTATGCAAACACTTGAACTGTGGAGACGGTGGGGAAATTGAAAGAGATTTCAAATATGGCAGAGGTTCTGGGCCCACGTGGCTGGATCACATTGAGTGCGCTGAGCAACACAGCTCTCTCTGGCAATGTCAGTCAGACCCCTGGGATCCTCAGTCATGTGATACCCGAGCAGAAGAGACCCATATTTCTTGCTCTG
Seq C2 exon
GAAGAAAAGGAACGGTGACTCCAGCCACATTTACTGAGTGTCCAAACTCTTCAAGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCAGGCTGGTGAATGG
R:
TGGACACTCAGTAAATGTGGCTG
Band lengths:
352-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]