DreEX6001433 @ danRer10
Exon Skipping
Gene
ENSDARG00000094603 | si:dkey-21h14.12
Description
si:dkey-21h14.12 [Source:ZFIN;Acc:ZDB-GENE-110913-1]
Coordinates
chr4:11085517-11086333:-
Coord C1 exon
chr4:11086016-11086333
Coord A exon
chr4:11085574-11085892
Coord C2 exon
chr4:11085517-11085555
Length
319 bp
Sequences
Splice sites
3' ss Seq
ATTAATGTGTTTACATGTAGAGT
3' ss Score
5.42
5' ss Seq
TAATTGATT
5' ss Score
-10.8
Exon sequences
Seq C1 exon
GCCGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGTGACTGTGCAGGGAGGCTGGAGGTTTTTCACAGCGGCTCATGGGGGACAGTGTGTGACGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACCCATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGAAAAACATGACTGTCTACACAAAGAGGATGTAGGAGTCGTCTGCTCTG
Seq A exon
AGTTTAAAGAGATCAGATTAACTGAGGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTGGAATCAGATGGACAGAGACACAGTGAGTCTGATCTGTCAAGAGCTGAACTGTGGAAGATCTGGAGTTTTGTCTGATTCTACATCAAGACTGAAATCTGCTCCTAACTGGCTTGATAAAGTTAAATGTCGACCACATGACTCTACTTTATGGCATTGTCCATCTACACCCTGGGGACAAAACTACTGTAATGAAGATGAAGTGGCCAATGTTACTTGCTCAGGTTTGATGGTATTTAA
Seq C2 exon
ATTATCAGACATATTCCCTTATCCCCTTAACTGTTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094603-'25-35,'25-34,26-35=AN
Average complexity
A_NA
Mappability confidence:
100%=25=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=88.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGGCTGGTGGGTTCTG
R:
TGATAACAGTTAAGGGGATAAGGGA
Band lengths:
347-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]