GgaEX0021519 @ galGal4
Exon Skipping
Gene
ENSGALG00000014720 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr1:77261820-77267779:-
Coord C1 exon
chr1:77267462-77267779
Coord A exon
chr1:77262351-77262665
Coord C2 exon
chr1:77261820-77261848
Length
315 bp
Sequences
Splice sites
3' ss Seq
TTTTATATCCTCACTTTCAGAGT
3' ss Score
10.31
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
CAGACAGCCAGCAGATCAGGCTGGTGAATGGAACAAAACGCTGTGCTGGGAGAGTGGAGCTTTATCATGATGGCATCTGGGGCACTATCTGTGATGATAACTGGGATCTATCAGATGCAAATGTTGTTTGCAGACAGCTTGGATGTGGATATGCCATCAAGGCATTAAACTCTGCTCATTATGGAGTAGGCTCGGGGCAAATCTGGCTGGATGATGTGAACTGCACTGGGTCTGAATCCAATATCTGGGCATGTCCCTCTAGGGTATGGGGTCATCACAACTGCCAACACAAAGAAGACGCTGGAGTTCTATGCTCAG
Seq A exon
AGTTCCTGTCTCTGAGGCTGGCGAATGGCAGTGGCTGTGCTGGACGGCTAGAAGTTTTCTACAATGGGACATGGGGGAGCATTTGCTCCAATCGTATGTCTCAACTCACTGCAGTAACTGTATGCAAACACTTGAACTGTGGAGACGGTGGGGAAATTGAAAGAGATTTCAAATATGGCAGAGGTTCTGGGCCCACGTGGCTGGATCACATTGAGTGCGCTGAGCAACACAGCTCTCTCTGGCAATGTCAGTCAGACCCCTGGGATCCTCAGTCATGTGATACCCGAGCAGAAGAGACCCATATTTCTTGCTCTG
Seq C2 exon
AAAGGCACTTCAAGAGAAAAGAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720-'6-7,'6-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.6)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGCCAGCAGATCAGG
R:
TGCTTTCTTTTCTCTTGAAGTGCC
Band lengths:
345-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]