HsaEX0054596 @ hg38
Exon Skipping
Gene
ENSG00000229739 | RP11-295K2.3
Description
NA
Coordinates
chr1:186451081-186470291:+
Coord C1 exon
chr1:186451081-186451274
Coord A exon
chr1:186466064-186466142
Coord C2 exon
chr1:186470271-186470291
Length
79 bp
Sequences
Splice sites
3' ss Seq
CATTATGCATATTTTTGCAGAAA
3' ss Score
7.17
5' ss Seq
AATGCAAGT
5' ss Score
0.87
Exon sequences
Seq C1 exon
ACAGAACTCTTTCTTGATTTCTCTTTTGCCTTTACCTTTGGTCTCAACACTTGGACTGGTCCTGTAATTTTGTTTCTCTTTTTGCAATCCCTATCCAGAATCACTGGAGGTCAAATGTCTTTGCCAATTTGAGTTTTTCCACTTGAACAAGAAAAGACTGTCAAGGGAAAGCCAATCAATTTCACAATGTTTAG
Seq A exon
AAAATGAATGTTATTCTCAGAAGAGAACTCAAAAAGGATTTCTATGAAGTCTCTGGCAGAAAACCGAGAAATTACAAAT
Seq C2 exon
GATTGGGCAACAAATAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229739_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development