HsaINT1032804 @ hg38
Intron Retention
Gene
ENSG00000229739 | RP11-295K2.3
Description
NA
Coordinates
chr1:186451081-186451749:+
Coord C1 exon
chr1:186451081-186451274
Coord A exon
chr1:186451275-186451629
Coord C2 exon
chr1:186451630-186451749
Length
355 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TAAAAATAATTTTATTTCAGATG
3' ss Score
6.78
Exon sequences
Seq C1 exon
ACAGAACTCTTTCTTGATTTCTCTTTTGCCTTTACCTTTGGTCTCAACACTTGGACTGGTCCTGTAATTTTGTTTCTCTTTTTGCAATCCCTATCCAGAATCACTGGAGGTCAAATGTCTTTGCCAATTTGAGTTTTTCCACTTGAACAAGAAAAGACTGTCAAGGGAAAGCCAATCAATTTCACAATGTTTAG
Seq A exon
GTAAGTATAAATGTAATAAAGAATATTACATTTGAATGGATTTAGTAATTAAAAAGCATAATGGAAAATGGAAAGTAAAAACTGCTGTACAGAAAAGCCATCTTATTACTTAGTGTAATTATTTATGAATAAATTTTGCATCTCAAAAGACATGAAAATTTTTACTTCGAAAGAAAACTACAAAACAAAGAAATGGAAATTTATTTGATAATTTCAATAGCTTTTCAGTTCCCAGAAAAATAGAGACTCAATCCAGTCTCTTTACTTTTTAAGACTGGATTGTTAATTTGGGGTAGCTACTATTCTCAGTAAATATACATAAGTTCAAGAAAATCTAAAAATAATTTTATTTCAG
Seq C2 exon
ATGCTGAAGATACAGGGCACAGCTTCCTTCTTGAATTGCTTGTTGTTTACCTAGTTGACAATCTACTGGGAAAAAGAAATTCCTTTTCCAGAAAAGGTTTTCACCAATTTCAAGGAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229739:ENST00000429768:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTTTCTTGATTTCTCTTTTGCC
R:
GGATTCCTTGAAATTGGTGAAAACCT
Band lengths:
310-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains