HsaEX0054858 @ hg19
Exon Skipping
Gene
ENSG00000248049 | RP11-453E17.1
Description
NA
Coordinates
chr4:68567079-68594404:+
Coord C1 exon
chr4:68567079-68567202
Coord A exon
chr4:68586140-68586769
Coord C2 exon
chr4:68594258-68594404
Length
630 bp
Sequences
Splice sites
3' ss Seq
CATCTGTGTATTTCCCACAGAAA
3' ss Score
10.2
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AGATGTAGATGGAACCAAAGTCCAGAAGTTACGCGTCACCCTTGCTCTACAGCCAAACATGCAGGACTCTAGTAACCCGCGAAATGATGGGATAGCGTTGCAAATCCTTAAAAGAGTCTTAACG
Seq A exon
AAATCCTGGCTGACATTGACTTCTCCACTGCAACCATCGAGTTCATTGTCTCCTAAACCTTGCCATGGAGGCCTGTGGCACCTGAGCCAGCCATTATCATCACCAGCACTTCCATGAGCTACAAGCTGGACCCACTGCAGTCCTCCTGACACACTGAAATCAGAGCCTGCACACAGAGCAGCAGATGCTTCAATGTAAAGGTCATTTCCAGGTCCTTGACAGGCGTGCATCTGGGCCAGATCCATGGCAATAACCTTCAGGTTGAGGCTAGAGGGCTTCAGATGGGCAGCTTCGAATGACAGGAGCAAGGCACAAGAGGCCGGAAAGGGAGGGTGACATTTTCAGCATCTATAAGATCAACTTTAGAAACATTTGGGGGTTGACAAATTCCCATCAAGCTCTGTGGATCTTGTACAACTGCTCACCACCGGCTTCTCATCAGCACATGATTGGTGCAGGGTTCTGAGGATGATTTTGAGATGTTCCCTGATGTGGTCTTGTGAGGAGATTTCATGACAGATGGCAGGAAGCTTCGTGGAGAGATTTCTGAAGACACTCCTGAGCTCCCAACACCGGGCAACTCTCTTCCAGAGGATAGTGGGGTGGAGGGTAGAAGAGAGGCAAAGTCAG
Seq C2 exon
GAGAAGGGAAAATGTTACATTGTCAAAGTCCCAAAGCCTTTCAGCCTGAAGCCAGGAACAATTGTTCAAAGTTTCTTTGGAACATCAAGGAAGGAAATCCAGATTTTACTTTAAGTGCAATGGGGAGTCATTAAGGATTTTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248049_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTAGATGGAACCAAAGTCCA
R:
TACACAAAATCCTTAATGACTCCCCA
Band lengths:
270-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)