HsaEX0054858 @ hg38
Exon Skipping
Gene
ENSG00000248049 | UBA6-AS1
Description
UBA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:49083]
Coordinates
chr4:67701333-67728686:+
Coord C1 exon
chr4:67701333-67701484
Coord A exon
chr4:67720422-67721051
Coord C2 exon
chr4:67728540-67728686
Length
630 bp
Sequences
Splice sites
3' ss Seq
CATCTGTGTATTTCCCACAGAAA
3' ss Score
10.2
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ACTGTTGCGACTGGCATCCGCATCCGGCAGATGTAGATGGAACCAAAGTCCAGAAGTTACGCGTCACCCTTGCTCTACAGCCAAACATGCAGGACTCTAGTAACCCGCGAAATGATGGGATAGCGTTGCAAATCCTTAAAAGAGTCTTAACG
Seq A exon
AAATCCTGGCTGACATTGACTTCTCCACTGCAACCATCGAGTTCATTGTCTCCTAAACCTTGCCATGGAGGCCTGTGGCACCTGAGCCAGCCATTATCATCACCAGCACTTCCATGAGCTACAAGCTGGACCCACTGCAGTCCTCCTGACACACTGAAATCAGAGCCTGCACACAGAGCAGCAGATGCTTCAATGTAAAGGTCATTTCCAGGTCCTTGACAGGCGTGCATCTGGGCCAGATCCATGGCAATAACCTTCAGGTTGAGGCTAGAGGGCTTCAGATGGGCAGCTTCGAATGACAGGAGCAAGGCACAAGAGGCCGGAAAGGGAGGGTGACATTTTCAGCATCTATAAGATCAACTTTAGAAACATTTGGGGGTTGACAAATTCCCATCAAGCTCTGTGGATCTTGTACAACTGCTCACCACCGGCTTCTCATCAGCACATGATTGGTGCAGGGTTCTGAGGATGATTTTGAGATGTTCCCTGATGTGGTCTTGTGAGGAGATTTCATGACAGATGGCAGGAAGCTTCGTGGAGAGATTTCTGAAGACACTCCTGAGCTCCCAACACCGGGCAACTCTCTTCCAGAGGATAGTGGGGTGGAGGGTAGAAGAGAGGCAAAGTCAG
Seq C2 exon
GAGAAGGGAAAATGTTACATTGTCAAAGTCCCAAAGCCTTTCAGCCTGAAGCCAGGAACAATTGTTCAAAGTTTCTTTGGAACATCAAGGAAGGAAATCCAGATTTTACTTTAAGTGCAATGGGGAGTCATTAAGGATTTTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248049_MULTIEX1-2/13=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGCATCCGCATCCG
R:
ACACAAAATCCTTAATGACTCCCCA
Band lengths:
289-919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development