HsaEX1042679 @ hg38
Exon Skipping
Gene
ENSG00000248049 | UBA6-AS1
Description
UBA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:49083]
Coordinates
chr4:67701333-67790511:+
Coord C1 exon
chr4:67701333-67701484
Coord A exon
chr4:67755189-67755255
Coord C2 exon
chr4:67790448-67790511
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATGAATATGTTCTTTTATAGGTT
3' ss Score
9.62
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ACTGTTGCGACTGGCATCCGCATCCGGCAGATGTAGATGGAACCAAAGTCCAGAAGTTACGCGTCACCCTTGCTCTACAGCCAAACATGCAGGACTCTAGTAACCCGCGAAATGATGGGATAGCGTTGCAAATCCTTAAAAGAGTCTTAACG
Seq A exon
GTTATCTGATCATTTCAAATTGGGACCACTTAGGAACTTTTTCTGTGTTGTTTCTTTAACTTTCATG
Seq C2 exon
CTCTTGGGTTGATAGCTTATGGCAGTGATAGTCAAGTGTATCACGCCGTGAAGTCAACTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248049_MULTIEX1-12/13=C1-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGAAGTTACGCGTCACC
R:
AAACAGTTGACTTCACGGCGT
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains