HsaALTD1047127-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000248049 | UBA6-AS1
Description
UBA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:49083]
Coordinates
chr4:67720422-67722505:+
Coord C1 exon
chr4:67720422-67720615
Coord A exon
chr4:67720616-67721051
Coord C2 exon
chr4:67721477-67722505
Length
436 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TAACCATTTCTCTCTTTCAGCTA
3' ss Score
11.43
Exon sequences
Seq C1 exon
AAATCCTGGCTGACATTGACTTCTCCACTGCAACCATCGAGTTCATTGTCTCCTAAACCTTGCCATGGAGGCCTGTGGCACCTGAGCCAGCCATTATCATCACCAGCACTTCCATGAGCTACAAGCTGGACCCACTGCAGTCCTCCTGACACACTGAAATCAGAGCCTGCACACAGAGCAGCAGATGCTTCAAT
Seq A exon
GTAAAGGTCATTTCCAGGTCCTTGACAGGCGTGCATCTGGGCCAGATCCATGGCAATAACCTTCAGGTTGAGGCTAGAGGGCTTCAGATGGGCAGCTTCGAATGACAGGAGCAAGGCACAAGAGGCCGGAAAGGGAGGGTGACATTTTCAGCATCTATAAGATCAACTTTAGAAACATTTGGGGGTTGACAAATTCCCATCAAGCTCTGTGGATCTTGTACAACTGCTCACCACCGGCTTCTCATCAGCACATGATTGGTGCAGGGTTCTGAGGATGATTTTGAGATGTTCCCTGATGTGGTCTTGTGAGGAGATTTCATGACAGATGGCAGGAAGCTTCGTGGAGAGATTTCTGAAGACACTCCTGAGCTCCCAACACCGGGCAACTCTCTTCCAGAGGATAGTGGGGTGGAGGGTAGAAGAGAGGCAAAGTCAG
Seq C2 exon
CTATGTGTTCCAAGATTACTGAAGCAGGATTCTGGCCTTCCTGATAAGAACATGACCAGATCCAGCTGGTTTGCAACAAGATGAACTTCAGTGCTGAGCTTTCACCAAGTTTTTCTCACTACAATCTCATTGTAATACTAAAATCTCCACCCAAGATGGAGGTTATCTGCCATTTTCTGTACATGTGTTACCAGAAAGGGGTCCTGATCCAGACCCCAAAAGAGGGTTCTTGGATCTCACGCAACAAAGAGTTCGGGGCGAGTCCATAGAGTAAAGTGAAAGCAAGTTCATCAAGAAAGCAAAGGAATAAAGAATGCCTACTCCATAGGCAGAGCAGTGGCTTTGGCTGCTCAGCTGCTTGTACTTGTTACTTCTTGAGTATATGCTAAACAAGGGATTGATTACTCCTTGTTTAGCAGTTTTCTGGGAAAGGAGTGGGCAATTCCCAGAACTGAGGGTTCCTCCCCTTTTTAGACCATATAGGGTGACTTCCTGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248049-5-12,6-12,7-12,9-12-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTGAGCCAGCCATTATC
R:
AACCCTCTTTTGGGGTCTGGA
Band lengths:
345-781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains