HsaEX1042678 @ hg38
Exon Skipping
Gene
ENSG00000248049 | UBA6-AS1
Description
UBA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:49083]
Coordinates
chr4:67701333-67790511:+
Coord C1 exon
chr4:67701333-67701484
Coord A exon
chr4:67754159-67754240
Coord C2 exon
chr4:67790448-67790511
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTCCACTTCTGAAGTTT
3' ss Score
4.31
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
ACTGTTGCGACTGGCATCCGCATCCGGCAGATGTAGATGGAACCAAAGTCCAGAAGTTACGCGTCACCCTTGCTCTACAGCCAAACATGCAGGACTCTAGTAACCCGCGAAATGATGGGATAGCGTTGCAAATCCTTAAAAGAGTCTTAACG
Seq A exon
TTTCAACAAGAAAGAAGCATTAAAGGTCGCAGAGAGCAGAAAAAGGAAGAAAGTAACCGTCACTCGGATCTTTCCAGACAAG
Seq C2 exon
CTCTTGGGTTGATAGCTTATGGCAGTGATAGTCAAGTGTATCACGCCGTGAAGTCAACTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248049_MULTIEX1-11/13=C1-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGAAGTTACGCGTCACC
R:
AAACAGTTGACTTCACGGCGT
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains