HsaEX0054859 @ hg38
Exon Skipping
Gene
ENSG00000248049 | UBA6-AS1
Description
UBA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:49083]
Coordinates
chr4:67701333-67732345:+
Coord C1 exon
chr4:67701333-67701484
Coord A exon
chr4:67730074-67730170
Coord C2 exon
chr4:67731506-67732345
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTTCCCATGTGAAGATA
3' ss Score
6.2
5' ss Seq
ACTGTGAGA
5' ss Score
2.78
Exon sequences
Seq C1 exon
ACTGTTGCGACTGGCATCCGCATCCGGCAGATGTAGATGGAACCAAAGTCCAGAAGTTACGCGTCACCCTTGCTCTACAGCCAAACATGCAGGACTCTAGTAACCCGCGAAATGATGGGATAGCGTTGCAAATCCTTAAAAGAGTCTTAACG
Seq A exon
ATACAGCAAAAAGACAACAATCTTCAAGCCACAATGGCCCTCACCAGAACCCAGCCATGTGGTCAGCCTGATCTCGGACTTCACAGCCAGCAGAACT
Seq C2 exon
GTTTGTCAAAGATCAGATGGTTTCCTTAAGCTGATAAGCAACTTCAACAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCATAAGCATTCTTATACACCAATAACAGACAAACAGCCAAATCATGAGTGAACTTCCATTCATAATTGCACAAAGAGAATCAAATACCTAGGAATCCAGCTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGGGGACACAAACAAATGGAAGAACATTCCATGCTCATGGTTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGATAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAGAAACTACGTTAAAGTTCATATGGAACCAGAAAAGAGCCTGCACTGCCAAGACAACCCTAAGCAAAAAGAACAAAGCTGGAGGCATCATGCCACCTGACTTCAAACTATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248049_MULTIEX1-5/13=C1-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACTCTAGTAACCCGCGA
R:
GGCTGTTTGTCTGTTATTGGTGT
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development