HsaEX0054859 @ hg19
Exon Skipping
Gene
ENSG00000248049 | RP11-453E17.1
Description
NA
Coordinates
chr4:68594258-68598063:+
Coord C1 exon
chr4:68594258-68594404
Coord A exon
chr4:68595792-68595888
Coord C2 exon
chr4:68597224-68598063
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTTCCCATGTGAAGATA
3' ss Score
6.2
5' ss Seq
ACTGTGAGA
5' ss Score
2.78
Exon sequences
Seq C1 exon
GAGAAGGGAAAATGTTACATTGTCAAAGTCCCAAAGCCTTTCAGCCTGAAGCCAGGAACAATTGTTCAAAGTTTCTTTGGAACATCAAGGAAGGAAATCCAGATTTTACTTTAAGTGCAATGGGGAGTCATTAAGGATTTTGTGTAG
Seq A exon
ATACAGCAAAAAGACAACAATCTTCAAGCCACAATGGCCCTCACCAGAACCCAGCCATGTGGTCAGCCTGATCTCGGACTTCACAGCCAGCAGAACT
Seq C2 exon
GTTTGTCAAAGATCAGATGGTTTCCTTAAGCTGATAAGCAACTTCAACAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCATAAGCATTCTTATACACCAATAACAGACAAACAGCCAAATCATGAGTGAACTTCCATTCATAATTGCACAAAGAGAATCAAATACCTAGGAATCCAGCTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGGGGACACAAACAAATGGAAGAACATTCCATGCTCATGGTTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGATAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAGAAACTACGTTAAAGTTCATATGGAACCAGAAAAGAGCCTGCACTGCCAAGACAACCCTAAGCAAAAAGAACAAAGCTGGAGGCATCATGCCACCTGACTTCAAACTATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248049_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGCCTTTCAGCCTGAA
R:
ACTTTGTTGAAGTTGCTTATCAGCT
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)