HsaEX1042683 @ hg38
Exon Skipping
Gene
ENSG00000248049 | UBA6-AS1
Description
UBA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:49083]
Coordinates
chr4:67730074-67745973:+
Coord C1 exon
chr4:67730074-67730170
Coord A exon
chr4:67731506-67732345
Coord C2 exon
chr4:67745827-67745973
Length
840 bp
Sequences
Splice sites
3' ss Seq
CCATTTCTTGTTTTTGTCAGGTT
3' ss Score
8.75
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATACAGCAAAAAGACAACAATCTTCAAGCCACAATGGCCCTCACCAGAACCCAGCCATGTGGTCAGCCTGATCTCGGACTTCACAGCCAGCAGAACT
Seq A exon
GTTTGTCAAAGATCAGATGGTTTCCTTAAGCTGATAAGCAACTTCAACAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCATAAGCATTCTTATACACCAATAACAGACAAACAGCCAAATCATGAGTGAACTTCCATTCATAATTGCACAAAGAGAATCAAATACCTAGGAATCCAGCTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGGGGACACAAACAAATGGAAGAACATTCCATGCTCATGGTTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGATAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAGAAACTACGTTAAAGTTCATATGGAACCAGAAAAGAGCCTGCACTGCCAAGACAACCCTAAGCAAAAAGAACAAAGCTGGAGGCATCATGCCACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAGCAGCATGGTACTGGTACCAAAACAGAGATATAGACCAACGGAACAGAACAGAGGCCTCAGAAATAACACCACGCATCTACAGTCTATGGTATTTTACTATGGAAGCCCACCCTAAGATTTCAATTTAGCTTCCATGTAGTTCCCTGGTGCTTGGCAATCTCCTGACTCACTACCTTGTCACATGGTCTATCCCAAGTCAGTCCTTCTCCTCTTCCCATATCCCCCTACTCCAATATTCACCCATATGTGGCCAAGTCTTCCTCCACCTGAGCTCCTTGCAGAGGAATGAACAATTGTTTGAACATTAATGAATATTAAA
Seq C2 exon
TGTATAACCTGAATCTAACCTTGAGAGGACAAATCCCAACTGAGAGACATTTTACAAAATGACTGGTCTGCACTCTCCAAAAATGTCAATATCATGAAACACAAAGAAAGACTGAGAAATGGTTCCAGCTAAAAGAATACTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248049_MULTIEX1-6/13=5-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAAGACAACAATCTTCAAGCC
R:
TCTTTAGTATTCTTTTAGCTGGAACC
Band lengths:
238-1078
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains