HsaEX0055085 @ hg19
Exon Skipping
Gene
ENSG00000237187 | RP11-65F13.2
Description
NA
Coordinates
chr5:92899070-92921354:-
Coord C1 exon
chr5:92921035-92921354
Coord A exon
chr5:92905596-92905708
Coord C2 exon
chr5:92899070-92899169
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGAATGGGATCTTCCTTCAGACA
3' ss Score
6.01
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GGGGAGACGCCGGGGGAGGAAGGCAGCCGGGAGAAGGAAAGCTGGGACGGGCCGGGACCACAGGAGCCCCAGCCCCACACAGCAACCACCCGGGCGAGAAAGAAAGAAAGAGCCAGGGAGGCGGGCGAAGCGCGGGGAGAGAAGCAGAGAAGAAATATTCACCTTCCCGCCTCATGCCCACTTTGAGGCACTTCTTGAGGCGGCAGTATTGGCACTGGTTGCGGTGGTGCTGGTCGATGGGACAGTTCCTGTTGGCACGGCATGTGTAAGTTAAGTTCCTGCGGACGCTCCTCTTGAAGAAACTTTTGCAGCCCTCGCAG
Seq A exon
ACAGGGACTGAGAAACGGAAATACTACCATCCTCCAGCCAATCTGTTGGGAGGACTGCTTGCAGAGGACTCGTGCTCCAGATGTTGCACTAGAGGCGCTGCAAGTGTGAGCAG
Seq C2 exon
CAGGTAGATGAAACTCAAGAGAAAAGGTGTGGATAAATGAAACTAGCCCATGATGAACCTGTTTTCTCCGTGACCACAATATTAACCAGGATGAATGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237187_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCACCTTCCCGCCTCATG
R:
GTGGTCACGGAGAAAACAGGT
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)