HsaEX0055085 @ hg38
Exon Skipping
Gene
ENSG00000237187 | NR2F1-AS1
Description
NR2F1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48622]
Coordinates
chr5:93563364-93581055:-
Coord C1 exon
chr5:93580467-93581055
Coord A exon
chr5:93569890-93570002
Coord C2 exon
chr5:93563364-93563463
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGAATGGGATCTTCCTTCAGACA
3' ss Score
6.01
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CCCGTGCCTGCCCCACAGCCCCTCCAGCTCGAATAATGGAGAACTGTCAATGCACTCCGCGAGCGGTGGCCCATTGTACGCAGCTGATGGCGAGGAGGCGACTGGGGGTAGCAGGGGCTCCTTGCCCTCGTCCCTATGCCCAAATAAACGCGCAAACGCGCTCCCGTCTTCTGGTCAGTTAAAAGGTGAAACGAACACGATTAAAATAGACCAAAAGAAAAGAAAGAAAAGAAAACCTTTCTATGTACAGATTCTAAATCGTACTCCCCATACAGTCAGAGGCAGGGAGTCGAGGGCAGAGGCAGCAGGCGGAGAGAGGGAGATAGGGCGAGGGAAGGAGAACGCGGAGAGAGACGAAGGGAGTGGGAGACCAGCGACAGCGAGCGCCAGGGCACCGCAGGCACACTGGATGCCCAGTCCGCCGGCCCAGCCGCCCTCGGACCCTGGACCGTGCGTCGTGGGCACCAGAAACGAGACTCGGCCAAATCCTGCCTCACCAG
Seq A exon
ACAGGGACTGAGAAACGGAAATACTACCATCCTCCAGCCAATCTGTTGGGAGGACTGCTTGCAGAGGACTCGTGCTCCAGATGTTGCACTAGAGGCGCTGCAAGTGTGAGCAG
Seq C2 exon
CAGGTAGATGAAACTCAAGAGAAAAGGTGTGGATAAATGAAACTAGCCCATGATGAACCTGTTTTCTCCGTGACCACAATATTAACCAGGATGAATGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237187_MULTIEX1-3/3=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGGGCGAGGGAAGGAGAAC
R:
GTGGTCACGGAGAAAACAGGT
Band lengths:
255-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development