HsaEX1026092 @ hg38
Exon Skipping
Gene
ENSG00000237187 | NR2F1-AS1
Description
NR2F1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48622]
Coordinates
chr5:93563364-93585648:-
Coord C1 exon
chr5:93585384-93585648
Coord A exon
chr5:93580467-93580691
Coord C2 exon
chr5:93563364-93563463
Length
225 bp
Sequences
Splice sites
3' ss Seq
AAATCGTACTCCCCATACAGTCA
3' ss Score
4.47
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGGGAGACGCCGGGGGAGGAAGGCAGCCGGGAGAAGGAAAGCTGGGACGGGCCGGGACCACAGGAGCCCCAGCCCCACACAGCAACCACCCGGGCGAGAAAGAAAGAAAGAGCCAGGGAGGCGGGCGAAGCGCGGGGAGAGAAGCAGAGAAGAAATATTCACCTTCCCGCCTCATGCCCACTTTGAGGCACTTCTTGAGGCGGCAGTATTGGCACTGGTTGCGGTGGTGCTGGTCGATGGGACAGTTCCTGTTGGCACGGCATGT
Seq A exon
TCAGAGGCAGGGAGTCGAGGGCAGAGGCAGCAGGCGGAGAGAGGGAGATAGGGCGAGGGAAGGAGAACGCGGAGAGAGACGAAGGGAGTGGGAGACCAGCGACAGCGAGCGCCAGGGCACCGCAGGCACACTGGATGCCCAGTCCGCCGGCCCAGCCGCCCTCGGACCCTGGACCGTGCGTCGTGGGCACCAGAAACGAGACTCGGCCAAATCCTGCCTCACCAG
Seq C2 exon
CAGGTAGATGAAACTCAAGAGAAAAGGTGTGGATAAATGAAACTAGCCCATGATGAACCTGTTTTCTCCGTGACCACAATATTAACCAGGATGAATGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237187_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGAAGGAAAGCTGGGA
R:
ACAGGTTCATCATGGGCTAGT
Band lengths:
300-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains