HsaEX1026090 @ hg38
Exon Skipping
Gene
ENSG00000175745 | NR2F1
Description
nuclear receptor subfamily 2 group F member 1 [Source:HGNC Symbol;Acc:HGNC:7975]
Coordinates
chr5:93583337-93585486:+
Coord C1 exon
chr5:93583337-93584422
Coord A exon
chr5:93584989-93585107
Coord C2 exon
chr5:93585401-93585486
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCGCGGCCCTCGGCGAGCAGCTC
3' ss Score
1.64
5' ss Seq
CAGGCGGCC
5' ss Score
-4.28
Exon sequences
Seq C1 exon
AAGGCAGCGAGAGCCCGGCGCCACCGGCACAACAAAAAGAGCAAAGTGTGTGATCTTCCTCGCCGGCTGCCTCCCGCTCTCCAGCGCTGCCTTCCTGAATGGCTGGCTGCGTCCGGCCCTGGACCTGGCCCCCCGACACCCGCGCGCCCTGATCGCCGGCGGCAGCCTCGCCCAGCGCCCTGCTCGGCTCACCGCGCTCCCCGCACTCCCGAGCCCGGCGAGGGCTCCCGCCGGGACAGCGGCGGCGCCGCGGGCGGCCCCGGCCTCCGCTCGCGCTCCGGCTGCGGCCCCGACTCCTGCTCGGACTCCGGCCCGGGTCCCGGCTCCTCCAGCGGCGCTCGCCGCAGCAGCTCCGGCGGCAGCTCCAGCGGCGCCTGCAGCCGCGACCTCCTCCTCCTCCGCCGCCGCCGCCGCCTCCGCCCTCGCCGGCTTCCTCTATGTCGGCTCAGCCCGCGCGCTGCGCGTAGCCCGAGCGGCCGGCGGGCGGGCGCCCGGCGCGG
Seq A exon
CTCGGCTCCCCCCAGCGCTCCCCGGGCCCAAAGATATGGCAATGGTAGTTAGCAGCTGGCGAGATCCGCAGGACGACGTGGCCGGGGGCAACCCCGGCGGCCCCAACCCCGCAGCGCAG
Seq C2 exon
GAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175745_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=1.000 C2=0.424
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=45.2)
A:
NO
C2:
PF0010513=zf-C4=WD(100=45.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACTCCTGCTCGGACTC
R:
GTTGCGGTGGTGCTGGTC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains